Lonchura striata (white-rumped munia): 110481949
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Entry
110481949 CDS
T05897
Symbol
NUP88
Name
(RefSeq) nuclear pore complex protein Nup88
KO
K14318
nuclear pore complex protein Nup88
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110481949 (NUP88)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsr03019
]
110481949 (NUP88)
Messenger RNA biogenesis [BR:
lsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
110481949 (NUP88)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup88
STX6_10_61_N
Motif
Other DBs
NCBI-GeneID:
110481949
NCBI-ProteinID:
XP_021406501
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All DBs
Position
19:4185359..4195882
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AA seq
720 aa
AA seq
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MAAECGPAEQWRAALPQHALFARLRERAPAAPRPPRLRDLLCGLGSDLLLWDGPAAALVA
VGLRRLGGTDPAALGRYQTLLCINPPLFDVHQTLLSPAQHHVALIGTKGLMVLELPKRWG
KNSEFEGGKSTVNCSTIPIAERFFTSSTSLTLKHAAWYPCDTMEPHIVLLTSDNTIRFYS
LKVPHTPIKVIVLSDTEEETLTIKTGRAYTASLGETAVAFDFGPQVPVPKHVLGQRGSEE
VLGYPLYILYENGETFLTYISLLQSTGSLGKLLGPLPMHPAAEDNYGYDACAVLCLPCIP
NILVIATESGMLYHCVVLDGEEDDEQSEKSWDPRSDLIPSLYVFECVELELALKLATGDE
EDPLESDFSCPIKLHQDPKCPSRYHCTHEAGVHSVGLTWINKLHKFLGSDEEDKDSLQEL
GAEQKCFVEHILCTKPLPCRQPAPIRGFWIVSDVLGPTMICITNTYECITRPLLSTVHPA
SPPLLCTSEDQDLAVSPLRIVAESEHSFEKHIQGILQRSSANPLHLKSADKDAAPPPEEC
LQLLSRATQVFREEYILKQDLAKEEIQQRVKLLWGQKKKQLEDLNYCREERKSLREMAER
LADKYEEAKEKQEDIMNRMKKVLRSFHSQLPVLSDTEKDMKKELQTIHDQLQHLSNAIRQ
VKMKKEYQQKQMEKGRSPRKPSISLSAYQSKCIQAVLREEGEHIREMVKQINDIRSHVNF
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgagtgcggcccggcggagcagtggcgcgcggcgctgccgcagcacgcgctg
ttcgcccgcctccgcgagcgcgcgcccgccgccccccgcccgccgcgcctccgcgacctc
ctgtgcgggctgggctccgacctgctgctctgggacgggcccgccgccgccctggtcgcc
gtcggcctgcgccgcctcggcggcaccgaccccgccgcgctcggccgctaccagaccctt
ctgtgcataaatccgcccctctttgacgtgcaccagacgctgctgagccccgcccagcac
catgtggcgctcattggtaccaaggggctcatggtgctggagctgcccaaacgctggggc
aagaattctgagtttgaaggtgggaaatccacggtcaactgcagcaccattcctattgcg
gaacggttcttcaccagctcaacatccctgactctaaagcatgcagcctggtacccctgt
gacaccatggagccccacattgtgctcttgacatcagataacactataaggttctacagt
ctgaaggtgcctcacacacccatcaaagtgattgtgctttcggacactgaggaggagact
cttacaatcaaaacagggagagcctacacagcgtccctgggcgagacggccgtggccttc
gacttcgggccgcaggtgccggtgccgaagcacgtcctgggccagcgcggcagcgaggag
gtgctgggctaccccctgtacatcctctatgagaatggagagaccttcctcacctacatc
agcctgctccagagcaccggcagcctggggaagctgctggggcccctgcccatgcacccg
gctgccgaggacaactacggctacgacgcctgcgccgtgctgtgcctgccctgcatccca
aacatcctggtcattgccaccgagtcgggaatgctctaccactgcgtggtgctggatgga
gaggaggacgatgagcagtcagaaaagtcctgggacccaagatctgatcttattccttcc
ctgtacgtgtttgaatgtgttgagctggaacttgcactgaaactggcgacaggagatgag
gaagatcctttggagtctgacttctcttgcccaatcaagctgcaccaagatcccaaatgt
ccctctagataccattgcacacacgaagctggtgtccacagtgtgggcctgacatggatc
aataaactgcacaaattccttggttcagatgaagaagataaagacagtttacaagagctg
ggagcagaacagaagtgctttgttgaacatattctttgtacaaaaccactgccatgcagg
cagcctgctccaattagaggattttggatcgtgtctgatgtcctggggcccacaatgatt
tgcatcaccaacacctatgagtgcattacaaggcctctcttgagcactgtccatcctgcc
tcccctcccctgctgtgcaccagcgaggaccaggacctggccgtgtccccgctgcgcatc
gtggccgagtcggagcattccttcgagaagcacatccagggcatcctgcagcgcagctct
gccaaccccctgcacctcaaatctgcagataaagatgctgctcctccccctgaagaatgc
cttcagctcctcagcagagccacccaggtgttcagagaggaatatatactgaaacaggac
ctggcaaaagaggaaattcagcaaagagtgaagctgctgtggggacagaaaaagaaacaa
ctggaggatctgaattactgtcgagaggagaggaaaagtttgcgggaaatggccgagcgc
ttggctgacaagtatgaggaagccaaagagaagcaagaagacatcatgaacaggatgaag
aaagtccttcggagtttccactctcagcttcctgttctctctgacactgaaaaagatatg
aagaaggagctgcagacaatccatgaccagctgcagcacctgagcaatgctatcagacag
gtgaaaatgaaaaaggaataccaacagaaacagatggagaaggggcgaagcccccgcaaa
cccagcatcagcctcagtgcctaccagagcaagtgcatccaggctgtcctgagagaggag
ggagaacacatccgggagatggtgaaacagatcaacgacatcaggagccacgtgaacttc
tga
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