Lonchura striata (white-rumped munia): 110481982
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Entry
110481982 CDS
T05897
Symbol
SUPT6H
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
lsr
Lonchura striata (white-rumped munia)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsr03021
]
110481982 (SUPT6H)
03036 Chromosome and associated proteins [BR:
lsr03036
]
110481982 (SUPT6H)
Transcription machinery [BR:
lsr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
110481982 (SUPT6H)
Chromosome and associated proteins [BR:
lsr03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
110481982 (SUPT6H)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
SPT6_acidic
Tex_central_region
Spt6_S1
HHH_3
S1
HHH_9
S1_RRP5
SH2
Tex_YqgF
Tex_N
Motif
Other DBs
NCBI-GeneID:
110481982
NCBI-ProteinID:
XP_021406536
LinkDB
All DBs
Position
19:6861104..6887935
Genome browser
AA seq
1723 aa
AA seq
DB search
MSDFVESEAEESEEEYNQDGEVVPRVTKKFVEEDEDDEEEEELNLDDQDEQGNLKGFIND
DDDEEEEEEASDSGDSEDDVGHKKRKRTFDDRLEDDDFDLIEENLGVKVKRQKFRRVRKM
SDDEDDEAEDYGKEEHEKEAIAEEIFQDGEGEEGGEAVEAPVAPQEEEEEEEEDESDIDD
FIVDDDGQPLKKPKWRKKLPGYTDAALQEAQEIFGVDFDYDEFEKYNEYDEEMEEEYEYE
DEETEGETRVRPKKTTKKRVSRRSIFEMYEPSELESSHLTDQDNEIRMTDMPERFQLRTI
PVKSAEDDELEEEADWIYRNAFATPTISLQESSDYLDRGQASSFSRKGPSTIQKIKEALN
FMRNQHFEVPFIAFYRKEYVEPELHINDLWRVWQWDEKWTQLKIRKQNLTRLFEKMQAYQ
YEQISADPDKPLADGIRALDTTDMERLKDVQSMDELKDVYNHFLLYYGRDIPKMQNAAKA
ARKKQKRIREDGEEEEGEGEDAEDDEQKGPELKQASRRDMYTICQAAGLDGLAKKFGLTP
EQFGENLRDSYQRHETEQFPAEPLELAKDYVCSQFPSPEAVLEGARYMVALQIAREPLVR
QVLRQTFQERAKINISPTKKGKKDIDEAHYAYSFKYMKNKPVKELRDDQFLKMSLAEDEA
LLTIDISIDMKGVEGYGSDQTYFEEIKQFYYRDEFSHQVQEWNRQRTMAIERSLNQFLYV
QMAKELKNKLLVEAKEYVLKACSRKLYNWLKVAAYRPDQQVEEDDDFMDENQGKGIRVLG
IAFSSARDHPVFCALVNGEGEVTDFLRLPHFTKRRNAWREEEREKKAQDIETLKKFLLNK
KPHVVTIAGENRDAQMLMEDVKRIVHELDQGQQLSSIGVELVDNELAILYMNSKKSENEF
RDYPPLLRQAVSLARRIQDPLIEFAQVCSSDEDILCLKLHPLQEHVVKEELLNALYCEFI
NRVNEVGVDVNRAIAHPHSQALLQYVCGLGPRKGTHLLKILKQNNTRLENRTQLVTMCHM
GPKVFINCAGFIKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDA
NPAGALEEILENPERLKDLDLDAFAEELERQGYGDKHITLYDIRAELSCRYKDLRTPYRS
PNTEEVFNMLTKETPETFYIGKMIICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQ
DNFPELSEVWNHFDSGSCPGQAIGVKTRLDNGVAGFIPTKFLSDKVVKRPEERVKVGMTV
HCRIMKIDIEKFSADLTCRTSDLMDKNNEWKLPKDTYYDFDSEAADHKQEEDMKRKQQRT
TYIKRVIAHPSFHNISFKQAEKMMETMDQGDVIIRPSSKGENHLTVTWKVNDGIYQHVDV
REEGKENAFSLGSMLWINTEEFEDLDEIVARYVQPMASFARDLLNHKYYQDCNGGDKKKL
EELLIKTKKEKPTFIPYFISACKDLPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQVFPT
VNGLFRWFKDHYQDPVPGITPSSSSRTRTPASINATPANINLADLTRAVNALPQNMTSQM
FSAIAAVTGQGQNPNATPAQWGSSQYGYGGSGGGSSAYHVFTTPAQQPVATPLMTPSYSY
TTPSQPITTPQYQLQANTTPQSTQSQAQSQPSSSSRQRQQPKTNSHAAIDWGKMAEQWLQ
EKEAERRKQKQRLTPRPSPSPMIESTPMSIAGDATPLLDEMDR
NT seq
5172 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacttcgtggagagtgaagcagaggagtcagaggaggagtacaaccaagatggg
gaggttgtacccagagtaaccaagaagtttgtagaggaagatgaggatgatgaggaagag
gaggagctgaacctcgatgatcaggatgagcaggggaacctgaaaggattcattaatgat
gatgacgatgaggaggaggaggaggaagccagtgactctggagactccgaggatgatgtt
ggccacaaaaagagaaagcgcacttttgatgaccgcctggaggatgatgacttcgacctc
attgaagaaaacttgggcgtcaaagtcaaaagacaaaaattcaggcgtgtgcgaaaaatg
tctgatgatgaggacgatgaagcagaagattatggaaaggaagaacatgagaaggaagcc
attgctgaagaaatctttcaggatggtgaaggcgaggaaggaggggaagctgtggaagct
cctgttgctccacaggaagaggaagaggaggaggaggaagatgaatctgacatcgatgac
ttcattgtggatgatgatggacaacctctgaagaagccaaaatggagaaagaagcttcca
ggatacacagatgctgctttgcaggaagcccaggaaatctttggtgtagacttcgactac
gatgagtttgagaagtacaacgagtacgacgaggagatggaggaggagtacgagtacgag
gatgaggagaccgaaggggagacacgcgtgcggcccaaaaagaccaccaagaaacgcgtc
agccgccgcagcatcttcgagatgtacgagcccagtgagctggagagcagccacctcaca
gaccaggacaacgagatccgcatgacagacatgcctgagaggttccagctgagaaccatc
ccagtgaagagtgctgaagatgatgagctggaggaagaagctgactggatttataggaat
gcatttgcaacacccaccatctccttgcaggaaagctctgactaccttgaccgtggacaa
gccagcagcttcagccgcaaggggcccagcaccatccagaagattaaagaagccctgaat
tttatgagaaatcagcattttgaggtcccgttcatcgccttctacagaaaggagtatgtg
gagccagagctgcacatcaacgacctgtggagggtctggcagtgggatgagaagtggacc
cagctgaagatccgcaagcagaacctgactcgactgtttgagaagatgcaggcctaccag
tatgagcaaatctctgctgacccagacaagcccttggctgatggaataagggccctggat
actactgacatggagaggctgaaggacgtgcagtccatggatgagctgaaggacgtgtac
aatcacttcctgctgtactatggcagagacatccccaagatgcagaatgctgccaaggcc
gctcgcaaaaagcaaaagcgtatccgggaggatggtgaagaagaggaaggtgaaggggag
gatgcagaggatgatgagcagaaggggcctgagctgaagcaggcttcccgaagggacatg
tacaccatctgccaggcagctgggctggatggcttggctaagaaatttggtctgacacct
gagcaatttggggagaatctccgagacagttaccagcgtcacgagacagagcagttccct
gcagagcccctggagctggccaaggattatgtgtgtagtcaattcccaagcccagaagca
gtgctggaaggagctcggtacatggtggctttgcagatcgccagggagcccttggtcaga
caggtcctgagacagactttccaagaacgagctaaaatcaacatttcaccaaccaaaaag
gggaagaaggatattgatgaagcccactatgcctattcctttaaatacatgaagaacaag
cctgtgaaggagctgagagatgaccagttcctgaaaatgagcctggcagaggacgaggca
ctgctcaccatagatatcagcattgacatgaaaggagtggagggttatggcagtgaccag
acgtactttgaggaaatcaagcagttctattaccgggacgagttcagtcaccaggtgcag
gagtggaatcggcagcgcaccatggccatcgagcgctccctcaaccagttcctctacgtg
cagatggccaaagaactgaagaacaagctcttagtggaggccaaggagtatgtcctcaag
gcttgcagccgcaaactttacaactggctgaaggttgctgcatacaggccagatcagcag
gtggaggaagacgatgatttcatggatgagaaccaagggaaggggatccgggtgctgggc
attgccttttcatcagccagggaccaccctgtgttttgtgccctcgttaatggagagggt
gaggtgacagatttcctccgactgccacatttcacaaagagaaggaatgcctggcgtgag
gaggagagggaaaagaaggcccaggatatcgaaacattgaaaaaattcctcctaaacaag
aagcctcatgtggtgacaattgcaggcgagaacagggatgctcagatgctgatggaggat
gtaaagagaattgttcatgagctggaccaaggtcagcagctgtcctctattggagtggag
ctggtggacaatgaactggccatcctctacatgaacagcaagaagtctgagaacgaattc
cgggattacccccctctgctgcgccaggccgtgtccctcgctcgccgcatccaggacccc
ctcatagagtttgcccaggtctgcagctctgatgaggatattctctgcctgaaactccac
cctctgcaggagcacgtggtgaaggaggagctgctgaacgctctctactgcgaattcatc
aaccgtgtgaacgaggtgggggtggatgtgaacagggccattgctcacccccacagccag
gctttgctgcagtacgtatgtggcctgggaccacgcaaaggcacccacctgctgaagatc
ttaaaacaaaacaacacccgtctggagaacaggacccagctggttacgatgtgtcacatg
ggacccaaagtgtttatcaactgtgctggcttcatcaaaattgacacagcatcactgggt
gatagcactgattcctacattgaagtcctagatggctctagggtccatcctgaaacctat
gaatgggccaggaaaatggcagtggatgccctggaatacgatgagtcagctgaggatgca
aatcctgcaggagctctggaggagatcctggaaaaccctgagcgcctgaaagacctggat
cttgatgcctttgctgaagaactggaaagacagggctatggtgacaagcacatcactttg
tatgacattcgagctgagctaagctgcagatacaaggacctgagaaccccgtaccgttct
cccaacacagaggaggtcttcaatatgctgaccaaagaaactccagagacattttacata
ggtaaaatgatcatctgcaatgtgactgggattgcccacaggcgcccacagggagagagc
tacgaccaggcgatacggaatgatgaaactggcctttggcagtgccctttctgccagcag
gacaacttcccagagctcagtgaggtttggaaccattttgacagcggttcctgcccaggt
caggccattggagtgaagacacgtctggataatggtgttgctggcttcatcccaacaaaa
tttcttagtgacaaggtggtcaagaggccagaagaaagggtgaaggtgggaatgaccgtc
cactgccgcatcatgaagattgacattgagaaattcagcgcagacctgacctgcaggacc
tcagacctgatggacaagaacaatgagtggaaactgcccaaagacacctactacgacttc
gactcggaggcagcagatcacaaacaggaggaagacatgaaaagaaagcagcagaggacg
acatacatcaagagggtaattgctcacccatcattccacaacatcagcttcaagcaagca
gagaagatgatggagaccatggaccaaggggatgtgattattcggccgagcagcaaaggg
gagaaccacctgactgtcacctggaaggtcaacgatggcatttaccagcatgtggatgtc
cgggaggagggcaaggagaacgccttcagcctgggctccatgctctggattaacacagag
gagtttgaagacctggatgaaattgttgctcgttatgtccagccaatggcttcttttgcc
agagacctattgaaccacaaatactatcaggactgcaatggtggagacaagaagaagctg
gaagagctgctgataaagaccaagaaagagaagccaacatttattccatactttattagt
gcctgtaaagacctacctggtaaattcctcttgggatatcagcctcgaggcaaaccaagg
atagagtatgtgacagtgacaccagagggattccgctaccggggccaagtcttccctact
gtgaacggacttttccgatggtttaaggatcattatcaggaccctgttccaggtattacc
cccagcagcagcagtcggaccaggactccagcctccattaatgctactccagctaacatc
aacctggcagacctgacacgtgcagtgaatgctctaccacagaacatgacctcccagatg
ttcagtgccattgctgctgtgacaggccagggacagaacccaaatgccaccccagcacag
tggggctccagccagtacggctacggaggcagcggaggcggcagcagcgcgtaccacgtg
ttcacgactccagcacagcagccggtggccacccctctgatgacccccagctactcctac
actactcccagccagcccatcaccacgccccagtaccagctccaggccaacaccacgccc
cagtccacccagtcccaggcacagtcgcagccatcatccagctccaggcagaggcagcag
ccaaagaccaacagccacgctgccatcgactggggcaagatggccgagcagtggctgcag
gagaaggaggctgagcggaggaaacagaagcagaggttgacccctcgcccctctcccagc
cccatgatcgagagcacgcccatgtccatcgccggggacgccacgcctctcctggatgag
atggatcgatag
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integrated database retrieval system
