Lonchura striata (white-rumped munia): 110482084
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Entry
110482084 CDS
T05897
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03030
DNA replication
lsr03420
Nucleotide excision repair
lsr03430
Mismatch repair
lsr03440
Homologous recombination
lsr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
110482084 (RPA1)
03420 Nucleotide excision repair
110482084 (RPA1)
03430 Mismatch repair
110482084 (RPA1)
03440 Homologous recombination
110482084 (RPA1)
03460 Fanconi anemia pathway
110482084 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lsr03000
]
110482084 (RPA1)
03032 DNA replication proteins [BR:
lsr03032
]
110482084 (RPA1)
03400 DNA repair and recombination proteins [BR:
lsr03400
]
110482084 (RPA1)
Transcription factors [BR:
lsr03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
110482084 (RPA1)
DNA replication proteins [BR:
lsr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
110482084 (RPA1)
DNA repair and recombination proteins [BR:
lsr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
110482084 (RPA1)
MMR (mismatch excision repair)
110482084 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
110482084 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
CATSPERD-E_C
DUF4939
OB_MEIOB_N
Motif
Other DBs
NCBI-GeneID:
110482084
NCBI-ProteinID:
XP_021406699
UniProt:
A0A218V1V6
LinkDB
All DBs
Position
19:6451366..6474298
Genome browser
AA seq
613 aa
AA seq
DB search
MSVRLSEGAIAAIMQGEEVFKPVLQVINTRAIATGTGPPRYRVLMSDGVNTLSSFMLATQ
LNSLVEEERLSARCICQVNRFIVNSLKDGRRVVILMDVTVLQTADQVGGPIGNPQPYNEG
QGQRSAAPAGNPAASKPQQQNGNLSGAGPAAPKYHAPSNQFGKASAPSALKTPGGSQIKV
VPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFSIELVDESGEIRATAFNDQADK
FFPLIELNKVYYFTKGNLKTANKQYTAVKNDYEITFTNETSVVPCDDAQHLPSVQFDFVS
ISDLENTPKDSIVDVIGICKSYEDVTKVVVKANNREVSKRNVHLMDTSGKLVTVTLWGSE
AEQFDGSRQPVIAIKGARVSDFGGRSLSVLSSSTVVINPDSPEAFKLRGWFDSEGQLLEG
ASISDVRGGPAAGANTNWKTLFEAKAENLGQGDKADYFSCVGTIVHLRKENCMYQACPSQ
DCNKKVIDQQNGLYRCEKCDREFPNFKYRLMLLVTIADCLEYQWVTCFQDTAELILGQTA
AFLGELKEKNEQAFEEVFQNANFNTYEFRIRVKLETYNDESRIKATAMDVKPVNYREYSK
RLIANIRRNAQLG
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgcggctgagcgaaggggccatcgcggccataatgcaaggggaggaagtcttc
aagcccgtgcttcaagtcatcaatacacgggctattgccacaggaactgggcccccacgt
taccgagtgctgatgagtgatggggtgaatactctctcctcattcatgttggcaacacag
ctgaactccctggtggaagaggaacgcttgtcagcccggtgcatttgccaggttaacaga
ttcattgtcaacagcctgaaagatggaaggagagtggtgatcctgatggatgtaactgtc
ctgcaaactgctgatcaggttggtgggcctattggcaatccccagccatacaatgaggga
caagggcaacgttctgcagctccagcaggaaacccagcagccagcaaaccacagcaacaa
aatggcaatttgtctggagcaggtcctgctgctcccaagtaccacgctccctccaaccag
tttggaaaagcgagtgctcccagtgccctgaagacacctgggggctctcagatcaaagtg
gtgccaattgccagcttgaatccataccagtccaagtggaccatttgtgctcgtgttacc
caaaaaggtcagatccgcacgtggagcaactctcgtggggaaggaaagctcttttccata
gagctggttgatgaaagtggtgagattagagctactgcattcaacgatcaagcagacaag
ttctttccactcattgaattgaacaaggtatattattttaccaaaggcaatttgaagact
gctaacaagcaatatacagctgttaagaatgactatgagattacattcactaatgagact
tcagttgtgccctgtgatgatgcccagcatcttccatctgttcagtttgattttgtatcc
atctctgacttggagaacacgcccaaagactcgattgttgatgtgattggaatttgcaag
agctacgaagatgtcactaaagttgtagtgaaagctaacaatagggaggtttcaaagagg
aacgtgcatctgatggatacatcagggaaactggtgacagttacactgtggggaagtgag
gctgaacagtttgatggttccagacaacctgtgattgccatcaaaggagcccgtgtgtct
gactttggtggcagaagcctgtctgtcctgtcctccagcacagttgtcatcaaccctgat
agcccagaggctttcaagctccgaggatggtttgactctgaggggcagcttctggaaggt
gcctccatctctgatgtgaggggtgggccagcagctggagcaaataccaattggaaaact
ttgtttgaagccaaagctgagaacttgggacaaggagataaggcagattattttagctgt
gtgggcacaattgtacatctgcgcaaagagaactgcatgtaccaggcatgtccctctcag
gattgcaacaagaaagtgatagaccagcaaaacggactttaccgctgcgagaagtgtgac
cgcgaattccccaacttcaagtaccgcctgatgctgctggtgaccattgcagactgtctg
gaatatcagtgggtgacttgttttcaagacacagcagaattaattcttggacaaactgca
gctttcctgggagaactgaaggaaaagaacgagcaggcttttgaagaagtgttccaaaat
gcaaacttcaacacctacgagttcaggatccgggtgaaactggagacttacaacgatgaa
tctcgtattaaggccacagcaatggatgtcaaacccgtcaactacagagaatacagcaag
agattgattgccaacatcaggagaaatgctcagctggggtga
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