KEGG   Lonchura striata (white-rumped munia): 110482093
Entry
110482093         CDS       T05897                                 
Symbol
RFC2
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
lsr  Lonchura striata (white-rumped munia)
Pathway
lsr03030  DNA replication
lsr03410  Base excision repair
lsr03420  Nucleotide excision repair
lsr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lsr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    110482093 (RFC2)
   03410 Base excision repair
    110482093 (RFC2)
   03420 Nucleotide excision repair
    110482093 (RFC2)
   03430 Mismatch repair
    110482093 (RFC2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lsr03032]
    110482093 (RFC2)
   03036 Chromosome and associated proteins [BR:lsr03036]
    110482093 (RFC2)
   03400 DNA repair and recombination proteins [BR:lsr03400]
    110482093 (RFC2)
DNA replication proteins [BR:lsr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    110482093 (RFC2)
  DNA Replication Termination Factors
   ELG1-RFC complex
    110482093 (RFC2)
Chromosome and associated proteins [BR:lsr03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    110482093 (RFC2)
DNA repair and recombination proteins [BR:lsr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     110482093 (RFC2)
  Check point factors
   HRAD17(Rad24)-RFC complex
    110482093 (RFC2)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_22 AAA_lid_RFC1 nSTAND_NTPase5 AAA_14 AAA_16 RCF1-5-like_lid Viral_helicase1 Mg_chelatase Rad17 AAA_11 RuvB_N AAA_assoc_2 nSTAND3 AAA_19 DNAX_ATPase_lid AAA_24 MipZ AAA_18 AAA_5 AAA_28 ABC_tran AAA_25 AAA_23 AAA_30 NTPase_1 SLFN-g3_helicase MeaB RNA_helicase FtsK_SpoIIIE
Other DBs
NCBI-GeneID: 110482093
NCBI-ProteinID: XP_021406718
UniProt: A0A218V272
LinkDB
Position
19:3491625..3499374
AA seq 356 aa
MDVDMAEDEKAGPSAGEKRGPTDPAGAAPGGGSGHYELPWVEKYRPTKLSEIVGNEDTVS
RLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRN
KIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKII
EPIQSRCAVLRYTKLTDAQILARLLKIVEKEDVAYTDDGLEAIIFTAQGDMRQALNNLQS
TYSGFGFINSENVFKVCDEPHPLLVKEMIQHCINANIDEAYKILAHLWRLGYSPEDVIGN
IFRVCKTFQMPEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTAAPAAS
NT seq 1071 nt   +upstreamnt  +downstreamnt
atggacgtggatatggcggaagacgagaaggccgggccgtcggcaggcgagaagcgggga
cccaccgaccccgcgggggccgcgcccggcggcggcagcggccactacgagctgccatgg
gtggaaaaatacagacccacgaaactgtctgaaatagttggaaatgaagatactgtgagc
aggttggaggtctttgcaaaagaggggaatgtaccaaatattataattgctggccctcca
ggaacaggtaaaaccaccagtatcctgtgtttggctcgtgctctgcttggtcctgcatta
aaggatgctgttctggagctgaatgcctcaaatgacagaggcattgatgttgtaagaaac
aaaatcaaaatgtttgcccagcaaaaggtcacacttccaaaaggtcggcataaaataatc
atccttgatgaagcagacagcatgacagatggtgcacagcaagccttgagaagaacaatg
gaaatttattccaaaacaacacgctttgcactggcgtgcaatgcctctgacaaaatcata
gaacctattcagtctcgctgtgcagtgctgcgttacaccaagctgacagatgcacaaata
cttgccaggctactgaaaattgtggagaaagaagatgtagcatatacagacgatggacta
gaagccattatcttcacagcccaaggtgatatgagacaggcattaaacaacttacagtcc
acatactctggatttggctttataaacagtgaaaatgtctttaaggtatgtgatgagcct
catcctctgctggtgaaggaaatgatacaacactgcataaatgcaaatattgatgaagca
tacaagattcttgcccacctgtggcgccttggatactctccagaagatgtcattggcaat
atcttccgtgtgtgtaagacctttcaaatgccagaatatctgaaactggaatttatcaag
gaaattgggtacacccacatgaagatagcagaaggtgtgaactccctgttacaaatggct
gggctgctggcccggctgtgccagaagactgcagcccctgcagccagctag

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