Lonchura striata domestica (Bengalese finch): 110482094
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Entry
110482094 CDS
T05897
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
lsr
Lonchura striata domestica (Bengalese finch)
Pathway
lsr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110482094 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsr03041
]
110482094 (PRPF8)
Spliceosome [BR:
lsr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
110482094 (PRPF8)
Complex C
U5 SnRNP specific factors
110482094 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
110482094
NCBI-ProteinID:
XP_021406720
LinkDB
All DBs
Position
19:complement(6369437..6387565)
Genome browser
AA seq
2335 aa
AA seq
DB search
MAAVFPYRGGCAPVPNPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYIAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLKDNRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
VAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQGSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgtgttcccgtaccgcggcggctgcgccccggtgcccaacccgctggcgccg
ctgcccgactacatgtccgaggaaaagctgcaggagaaagcccgcaagtggcagcagctg
caggccaagcgctacgcggagaagaggaaattcggcttcgtggacgcgcagaaggaggac
atgccccccgagcatgtccgcaaaatcatccgcgaccacggcgacatgaccaataggaag
ttccgtcacgacaagcgagtctacctgggtgctctgaagtacatgccccatgctgtactg
aagctcctggagaacatgcccatgccctgggagcagatccgggacgttcccgtcctgtac
cacatcacgggcgccatctcctttgtcaacgagatcccctgggtcatcgagcctgtctac
attgcccagtggggctccatgtggattatgatgaggcgggagaagagggacaggcgccac
ttcaagaggatgagattccccccgtttgacgatgaagaaccccctctggattatgctgat
aacatcctggatgtggagcccctggaagccattcagctggagctggatccagaggaggat
gcccctgtgctggactggttctatgaccaccagcctctgaaggacaacaggaagtatgtc
aacggctccacgtaccagcgctggcagttcaccctccccatgatgtccaccctgtaccgc
ctggccaaccagctgctcactgacctggtggatgacaactacttctacctgtttgacctg
aaagcgttcttcacctccaaggcactgaacatggccattcctggaggtcccaagtttgag
cccctcgtcagggacatcaatcttcaggatgaagactggaatgaatttaatgacatcaac
aaaatcatcatcaggcagcctatcaggacagagtacaaaattgctttcccctacctgtac
aacaacctgccccaccatgtccacctcacctggtatcatactccaaatgttgttttcatt
aaaacagaagatcctgacctcccagctttttactttgatcctctgatcaaccccatttca
cacagacattctgtcaagagccaggaaccactgcctgatgacgatgaagagtttgagttg
ccagagtttgtagagcctttcctgaaggatacccctctctacactgataacacagccaat
ggcattgccttgctgtgggccccacgacccttcaacttgaggtctggcaggacccggaga
gctcttgacatcccactggtcaagaactggtaccgtgagcactgcccagcaggacagcca
gtcaaggtgagagtctcctaccagaagctgctgaaatactatgtcctgaatgcactcaaa
cacagacctcccaaggcccagaagaagaggtacctgttccgctccttcaaggctaccaag
tttttccagtcgaccaagctggactgggtggaagttggcctgcaggtttgtcgccagggc
tacaacatgctgaacctgctgatccacagaaagaacctgaattaccttcatttggattac
aacttcaatctgaagcctgtgaagaccctcaccacaaaggaaagaaaaaaatcccgtttt
gggaatgctttccatctgtgccgagaggtcctgcggctgaccaagctggtggtggacagc
cacgtccagtacagactgggaaatgtggatgcatttcagctggcagatggcctgcagtac
atctttgcccacgtgggtcagctcacggggatgtaccggtacaaatacaaactgatgagg
cagattcgaatgtgcaaggacctgaaacatctcatctactacaggtttaacacagggcct
gtgggcaaaggtcctggctgtggtttctgggctccaggctggagagtgtggttgttcttc
atgaggggcatcaccccactgctggaacgctggctggggaatctgctggccaggcagttt
gaaggccgtcactccaagggtgtcgccaagactgtcacgaagcagcgtgtggagtctcac
tttgacctggagctcagggcagctgtgatgcatgacatcctggacatgatgccagaaggg
atcaagcagaacaaagccagaaccatcctgcagcacctgagcgaggcttggcggtgctgg
aaggccaatattccctggaaggtgccagggctgccaactcctattgagaacatgatcctg
aggtacgtgaaggccaaagctgactggtggacaaacacagctcactacaaccgggagcgg
atccgccggggagccactgtcgacaaaaccgtctgtaagaagaacctgggcaggctcact
agactctacctgaaagctgagcaggagcggcagcataattacctgaaggatgggccttac
atcactgcagaagaggccgttgctgtgtacacaaccacagtgcactggctggagagcagg
aggttctcccccattcctttccccccactgtcctacaagcatgacaccaagttgctgatc
ttagccctggagaggctgaaggaagcttacagtgtgaaatcacgcctgaatcagtcacag
agagaggagctgggcttgattgagcaggcttatgataatccccacgaagctttgtccaga
atcaagcgacatctgttgactcagagagccttcaaggaggtgggaattgagttcatggat
ctctacagccacttggtccctgtttatgatgttgagcccctggagaagatcacagatgct
tatctggatcagtacttgtggtatgaggccgataagcgaaggctctttcctccttggatc
aaacctgctgacactgaaccacccccactgctggtgtacaagtggtgccaaggcattaat
aacctgcaggatgtttgggaaacgagtgaaggggaatgcaacgtgatgctggaatctcgg
ttcgagaagatgtatgagaagattgacctgaccttgctcaacaggctgctgcgtctcatc
gttgatcacaacattgctgactacatgacagccaaaaacaacgtggtgatcaactacaag
gacatgaatcacacaaactcctatgggattattcgtgggctgcagtttgcttccttcatt
gtccagtactatgggcttgtgatggacctgctggtgctgggcctgcacagggccagtgag
atggctgggcctccccagatgccaaatgacttcctcagcttccaggacattgccacggag
gtggcccaccccattcgcctcttctgcagatacattgacaggattcacatcttcttcagg
tttacagctgatgaggcaagagacctgatccagcggtacctgacagaacaccctgacccc
aacaacgagaacattgtgggctacaacaacaagaagtgctggccccgggatgctcgcatg
cgcctcatgaagcacgacgtgaaccttggccgtgctgtgttttgggatatcaagaaccgt
ttgccccgctcggtgaccacggtgcagtgggagaacagcttcgtgtccgtgtacagcaag
gacaaccccaacctgctgttcaacatgtgcggcttcgagtgccgcatcctgcccaagtgc
cgcaccagctacgaggagttcacccacaaggacggcgtctggaacctgcagaacgaggtg
accaaggagcgcacggctcagtgcttcctgcgtgtggatgatgagtccatgcagaggttt
cacaacagagtgaggcagatcctcatggcctctggctccacaaccttcactaagattgtc
aataaatggaacacagctctgattggcttgatgacttatttccgggaagctgttgtaaat
actcaggagctgcttgatttgctggtgaagtgtgagaataagatccagactcggatcaag
atcggcctgaattccaaaatgcccagccgttttcctcctgtggtgttctacacccctaag
gagctgggggggctgggcatgctctccatgggtcatgttctcatccctcagtctgacctg
aggtggtccaagcagacagatgttggcatcactcacttccgctcgggaatgagccatgag
gaggaccagctcatcccaaatctgtaccgttacatccagccgtgggagagtgaattcatt
gactctcagagggtgtgggcagagtatgccctgaaacgacaggaggctatagcccagaac
aggcgtctgacgctggaggatctggaggactcctgggacaggggaattcctcggattaac
acccttttccagaaggaccggcacactctggcttatgataaaggttggagagtcaggact
gacttcaagcagtatcaggtgctgaagcagaacccgttctggtggacacaccagcgccac
gacgggaagctctggaacctgaacaattaccgcacggacatgatccaggccctgggcggg
gtggaagggatcctggagcacacgctcttcaagggcacctacttccccacgtgggagggt
ctcttctgggaaaaggccagtggctttgaggaatccatgaagtggaagaagctgacaaat
gcccagagatcgggtttgaaccaaattccaaacagaagattcactctctggtggtctcct
accatcaacagagccaatgtgtatgttgggttccaggtgcagctggatttgacagggatc
ttcatgcatggcaaaatccccacgctgaagatttccctcatccagattttccgagctcac
ttgtggcagaagatccatgagagcattgtcatggatttgtgtcaggtgtttgatcaagag
ctggatgctctggagattgagacagtgcaaaaagagacaatccatcccaggaagtcctac
aagatgaactcctcgtgtgcagatatccttctctttgcttcctacaagtggaatgtgtca
cgtccatccttgctggcagattccaaggatgtgatggacagcaccaccacccagaagtac
tggattgacatccagctgcgctggggcgactatgactcccacgacatcgagcgctacgcc
agggccaagttcctggactacaccacagacaacatgagcatctacccttctcccactggg
gtgctcattgccattgatctggcctacaacttgcacagtgcttatgggaactggttccct
gggagcaagcctctaatccagcaggccatggctaaaatcatgaaagcaaaccctgccctg
tatgtgttgagggagcgaatccgcaaagggctgcagctctactcctcagagcccacggag
ccctacctgtcctcccagaactatggggagctcttctccaaccaaatcatctggtttgtg
gatgacaccaacgtgtacagagtcaccatccacaagacttttgaagggaatttgaccacc
aaacccatcaacggagccattttcatcttcaatcccagaactggacagctcttcttgaag
atcatccacacatctgtgtgggcaggacagaagcgtctgggacagctggccaagtggaag
actgctgaagaagtggctgccttgatccgatcccttcccgtggaggagcagccaaagcag
atcatagtgacacggaagggcatgctggacccgcttgaggtgcacttgctggatttcccc
aatattgtgatcaaaggctcggagttgcagctgcccttccaggcctgtctgaaagtggag
aagtttggtgacctcatcctgaaggctactgaaccccagatggttctcttcaatctctat
gatgactggctgaaaaccatctcttcctacacagcattctcccgtctgatcctgattctc
cgggcactacatgtgaataatgatcgagccaaagttatcctgaagccagacaagacaacc
atcactgagcctcaccacatctggccaactctgacagatgaggagtggatcaaggtggag
gtgcagctgaaggatctcatccttgctgactatggcaagaagaacaacgtgaacgttgca
tccctgacgcagtcagagatccgagacatcatcctgggcatggagatctctgccccatct
cagcagaggcagcagattgcagaaatcgagaagcaaaccaaggagcagtcgcagctgacg
gccacgcagacccgcacggtgaacaaacacggggatgaaattatcacctccaccaccagc
aactacgaaacccagaccttctcctccaagactgagtggagggtcagagcaatctctgct
gccaacctccacctgcggacaaaccacatctacgtctcatcagacgacataaaggagact
ggttacacctacattcttcccaaaaatgtgttgaagaagttcatctgtatctcagacctg
cgtgcccagattgcaggttacctgtatggagtgagccctccagacaacccccaggtgaag
gagatccggtgcattgtgatggtgccccagtgggggacacaccagaccgtgcacctccca
gggcagctgccacagcacgagtatctcaaggaaatggaacctctggggtggattcacacg
caaccaaacgagtcccctcagctctcgccacaggatgtcaccacccacgccaaggtcatg
gctgacaacccctcctgggatggggagaagaccatcatcatcacctgcagtttcacccct
ggctcctgcacgttgacagcctacaaactgaccccgagcgggtacgagtggggccggcag
aacacggacaagggcaacaaccccaagggttacctcccctcccactacgagagggttcag
atgctcctgtccgaccgcttcctcggcttcttcatggtcccagcacagggctcctggaac
tacaacttcatgggtgtccgccacgaccccaacatgaagtacgagctgcagctcgccaac
cccaaggagttttaccacgaggtccatcgcccctctcacttcctcaacttcgcgctgctg
caggagggggaggtttactctgccgaccgcgaggatctctacgcctga
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integrated database retrieval system
