Lonchura striata (white-rumped munia): 110482254
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Entry
110482254 CDS
T05897
Symbol
TNC
Name
(RefSeq) tenascin
KO
K06252
tenascin
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr04510
Focal adhesion
lsr04512
ECM-receptor interaction
lsr04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110482254 (TNC)
04518 Integrin signaling
110482254 (TNC)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110482254 (TNC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lsr00536
]
110482254 (TNC)
Glycosaminoglycan binding proteins [BR:
lsr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110482254 (TNC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
EGF_TEN
Fibrinogen_C
EGF_Teneurin
EGF_2
EGF_Tenascin
Fn3_PBP1
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_3rd
Fn3_Dep-1_2nd
Pur_ac_phosph_N
DUF7949
EGF
Interfer-bind
NDNF
Fn3_ROS1
EGF_PEAR1L
DUF4998
hEGF
Fn3_R-PTP-O
EGF_TGFA-like
SPE9_EGF_3rd
Big_5
Motif
Other DBs
NCBI-GeneID:
110482254
NCBI-ProteinID:
XP_021407059
LinkDB
All DBs
Position
17:complement(516551..590796)
Genome browser
AA seq
1776 aa
AA seq
DB search
MGLPSQVLACAILALLSQHVTGGLIKRIIRQKREAGLNVTLPEDNQPVVFNHVYNIKLPV
GSLCSVDLDTASGDADLKAEIEPVKNYGEHTVNEGNQIVFTHRINIPRRACGCAAAPDIK
DLLSRLEELEGLVSSLREQCASGAGCCPNSQAAEGRLDTTPYCSGHGNYSIEICGCVCEP
GWKGPNCSQASCPSDCNDQGKCVDGLCVCFEGYTGPDCGQELCAQGCGAHGRCVGGQCLC
HEGFVGDDCSVPLCPHNCHGRGRCVDSECVCEEGYTGEDCSELICPNDCFDRGRCVNGTC
FCEEGFAGEDCGELTCPNDCHGNGRCENGLCVCHEGFVGDDCSERRCPNDCHNRGRCVGG
RCVCHEGYLGEDCAELRCPNDCNNRGRCENGQCVCHEGFIGEDCGELRCPNDCHHRGRCE
NGQCVCHEGFTGDDCGQLRCPSDCHNRGLCVNGQCVCDEGYTGEDCAELRCPNDCHNRGR
CVEGRCECDNGFTGDDCGELACPNSCHGRGRCENGRCVCHEGFVGEDCRERSCPNNCNNA
GRCVDGRCVCEDGYIGDDCSDVSPPTELTVTNVTDKTVNLEWKHENLVNEYLITYVPTSS
GGLDMQFTVPGNHTAATIHELEPGVEYFIRVFAILKNKKSIPVSARVATYLPAPEGLRFK
SVRETSVQVEWDPLNFSFDGWELVFHNMKKDDNGDITSSLKRPETSYMQPGLAPGQQYNV
SIHIVKNNTRGPGLSKVITTKLDAPSQVEAKDVTDTTALITWSKPLAEVEGVELTYGPKD
IPGDRTTIDLSEDENQYSIGNLRPHTEYEVTLVSRRGDMESDPVKEVFVTDLDAPRNLKR
VSQTDSSITLEWKNSHANVDNYRIKFAPISGGDHVEITVPKGNQATTRATLTGLRPGTEY
GIGVTAVRNDRESAPATINAGTDLDNPKDLEVSEPTETTLSLRWRRPVAKFDHYRLVSTS
PSGKKSEVEIPVDSTSFLLRGLEPGTEYTISLLAEKGRHKSKPTTVKGSTEEEPELGELS
VSEPGWDGFQLTWTAADGAYENFVLQVQEPGKPEETRNVTVPGTLSSVNVTGLKANTPYT
ITLQGVTGGYRSKPLSLETATGEQPGVAELTVSNITPESFNLSWTASNGDFDAFTIEIID
SNRLLEPMEFNLSGNSRTAHISGLSPSTDFIVYLSGISRGFRTQAISAAATTEAEPEVDN
LLVSDATPDGFRLSWTADDGVFNSFVLKIRDTKRKSDPLELIVPGHERTQDITGLKEGTE
YEIELYGIGSGQRSQPVNTVASTAVGSPKGISFSDITENAATVSWTPPRSRVENFRISYV
PVTGGTPNVVTVEGSKTRTKLVKLVPGVDYNVSVISVKGFEESEPVSGILKTALDSPSGL
VVVNITDSEALATWQPAIAAVDNYVVSYSSEKEAEVTQLVSGNTVEYDLKGLQPATEYTL
SVHAQKDAQSSETLSTHFTTGLDAPRDLSTTEVQSEAAVISWRPPRAPVTGYLLIYESID
GRVKEVILNPETTSYSLTELSPSTQYTVKLQALSGALRSKTIQTIFTTTGLLYPYPKDCS
QALLNGEATSGLYTIYLNGDKAQPLQVFCDMGEDGGGWIVFLRRQNGKQDFYKNWNSYVA
GFGDPKDEFWIGLENLHKITSQGQYELRVDLRDKGDTAYAVYDRFSVGDAKSRYRLRVDG
YSGTAGDSMTYHNGRSFSTFDKDHDSAITNCALSYKGAFWYKNCHRVNLMGRYGDNSHSQ
GVNWFHWKGHEYSIQFAEMKLRPSSFRNLEGRRKRA
NT seq
5331 nt
NT seq
+upstream
nt +downstream
nt
atgggactccccagccaggtcttggcctgtgccatcctcgctttgctgtcccagcatgtc
actgggggactcatcaagagaattatccggcagaagagggaggctgggctgaatgtgacc
ttgccagaggataaccagcctgtggttttcaaccatgtctacaacatcaagctgcctgtt
ggctccctctgctccgtggacctggacacggcgagcggcgatgctgacctgaaggcagaa
attgagcccgtcaagaactacggggagcacacggtgaatgaggggaaccagattgtcttc
actcacaggattaacattccccgccgggcctgtggctgtgcagctgccccagacattaag
gatctgctgagcagactagaggagctggaggggctggtctcctccctgcgggagcagtgt
gccagtggggctggatgctgtcctaattcccaggcagcagaaggtcgcctggacaccaca
ccctactgcagtgggcacggcaactacagcatcgagatctgcggctgcgtctgcgagccc
ggctggaagggccccaactgcagccaggcctcgtgtccctccgactgcaacgaccagggc
aagtgcgtggacgggctgtgcgtgtgcttcgagggctacacgggcccggactgcggccag
gagctctgcgcccagggctgcggcgcccacgggcgctgcgtgggcgggcaatgcctgtgc
cacgagggctttgtgggcgacgactgcagcgtgcccctgtgcccccacaactgccacggc
cgcgggcgctgcgtggacagcgagtgcgtgtgcgaggagggctacactggcgaggactgc
agcgagctcatctgccccaacgactgcttcgaccgcgggcgctgcgtgaacggcacctgc
ttctgcgaggagggcttcgccggcgaggactgcggggagctcacctgccccaacgactgc
cacggcaacgggcgctgcgagaacgggctgtgcgtgtgccacgagggattcgtgggcgac
gactgcagcgagaggaggtgccccaacgactgccacaaccgcgggcgctgcgtgggtggg
cgctgcgtgtgccacgaggggtacctgggcgaggactgtgccgagctgcgctgccccaat
gactgcaacaaccgcgggcgctgcgagaacgggcagtgcgtgtgccacgaggggttcatc
ggggaggactgcggggagctgcggtgccccaacgactgccaccaccgcgggcgctgcgag
aacgggcagtgcgtgtgccacgaggggttcaccggggatgactgtggccagctgcggtgt
cccagcgactgccacaaccgcgggctgtgtgtcaacgggcagtgcgtgtgcgacgagggg
tacacgggtgaggactgcgccgagctgcgctgccccaatgactgccacaaccgcgggcgc
tgcgtggaggggcgctgcgagtgtgacaacggcttcacgggtgacgactgtggcgagctg
gcctgtcccaacagctgccacgggcgtgggcgctgcgagaacgggcgctgcgtgtgccac
gagggcttcgtgggtgaggactgccgggaacgctcctgccccaacaactgcaacaacgcg
gggcgctgcgtggacgggcgctgtgtctgcgaggatggctacattggggatgactgctcc
gatgtgtctcctccaactgagctgactgtgaccaacgtgacagataaaactgtcaatctg
gagtggaagcacgagaacttggtcaatgagtatctcatcacctacgtccccaccagcagt
gggggcttggacatgcagttcaccgtgccaggaaaccacacagctgccaccatccacgag
ctggagccgggggtggagtactttatccgtgtctttgcaatcctgaaaaacaagaagagt
attccagtcagtgccagggtagccacatatctgcctgctccagaaggtctgagattcaaa
tctgttcgggaaacatccgtccaggtggagtgggaccctctgaacttctcttttgatggc
tgggagctggtcttccataatatgaaaaaggatgataatggtgacataaccagcagcttg
aaaaggccagagacatcctacatgcaaccaggtttggcacctggccagcagtacaatgtg
tccatccatatagtgaagaacaacaccagaggaccaggactgtccaaagtcatcaccaca
aagcttgatgcccccagccaggtggaggccaaagacgtcaccgacaccacggctctcatc
acgtggtccaaacccttggctgaagttgaaggtgtggagctcacttatggccccaaggac
attccaggggacaggacgaccattgacctctctgaagatgagaaccaatattccattggc
aacctgaggccacacacggagtacgaggtgacgctcgtctctcgtcgaggggacatggaa
agcgaccctgtgaaggaagtctttgtcacagacctggatgctccaaggaacctgaagcgg
gtgtcccagactgacagcagcatcaccctggagtggaagaatagccacgccaatgttgat
aattaccgaattaagtttgcccccatctctggcggggaccatgtggagatcacagtgccc
aagggcaaccaggccacaaccagagctacactcacaggtctgaggcctggaactgaatat
ggcattggagtgacagcagtgaggaacgacagggaaagtgctcctgctactatcaatgct
ggcactgatcttgataaccccaaggacttggaagtcagcgagcccactgagaccaccttg
tccctgcgctggagaaggccggtggccaagtttgaccactaccgcctggtttccaccagt
ccctccgggaagaagagcgaggtggagatccccgtggacagcacctccttcctgctgcgg
gggctggagccaggcactgagtacaccatcagcctgctggcagagaagggacggcacaaa
agcaaacccaccactgtcaagggctccacggaggaggaacctgagctgggggaattgtca
gtgtcagagcctggctgggatggtttccagctcacctggacagcagccgacggcgcctat
gagaactttgtcctccaggtgcaggagcctggcaagcccgaggagacccggaatgtcaca
gtcccggggacactgagctctgtgaatgtcaccggcctcaaggccaacactccttacacc
atcacccttcagggggtcactgggggctacaggagcaagcccctttctcttgagactgcc
acaggagagcagcccggcgttgctgagctcacggtttccaacattacccccgaaagcttc
aacctctcctggacagcctccaatggggacttcgatgcctttaccattgaaattattgat
tctaacaggttgctggagcccatggagttcaacctctcaggcaactcaaggactgctcat
atctcagggctttctcccagcactgatttcattgtctacctctccgggatctctcgcggg
ttccgcacacaggcaatcagtgctgcagctaccacagaagcagagcccgaggtcgacaac
cttctggtttcagatgcaaccccagatggattccgtctctcctggactgcagatgatggg
gttttcaacagttttgttctaaaaatcagggacaccaaaaggaaatctgaccccctggag
ctgatagtgccaggccatgagcgcacccaggatataacagggctgaaagagggcactgaa
tatgagattgagctctatggaattggcagtggacaacgttcccagcccgtaaacacagta
gcatccacagcggtgggctcgcccaagggaatttctttctctgacatcacggaaaatgct
gccacagtcagctggaccccgccccgctcccgcgtggaaaacttccgcatctcctacgtc
cccgtcacgggaggtaccccaaatgttgtcacagttgaaggaagcaagacaaggaccaag
ctggtgaagctggtcccaggtgtggactacaatgtcagtgtcatctctgtgaaaggcttt
gaagaaagcgagcccgtctctggcatcctgaaaacagctctggacagcccgtcaggcctg
gtagtggtgaacatcacagactctgaggctctggcaacctggcagccagcaattgctgct
gtggataactacgtggtgtcctattcatctgagaaagaggcagaagtgacccagctggtc
tcagggaacacggtggagtatgacctgaaggggctgcagcctgccacggagtacacgctg
agcgtccacgcgcagaaggacgcgcagagcagcgagaccctctccacccacttcaccaca
gggctggatgctccaagggatttgagtaccactgaggtgcagtcagaagcagctgtgata
agctggaggcctccccgagctccagtcactggatatctcctgatctatgaatccatcgat
ggcagagtcaaggaagtcatcctaaaccccgagacaacttcctacagcctgacagagctg
agcccctccacgcagtacacggtgaaactgcaggccctgagtggggctctgaggagcaaa
accatccagaccattttcaccaccactgggctcctctatccctaccccaaggactgctcc
caggccctgctgaatggagaagccacctctgggctctacacgatttacctgaacggggac
aaggctcagcctctgcaggtgttctgtgacatgggcgaggacggcggcggctggatcgtg
ttcctgaggcgtcagaatggaaaacaagatttctacaagaactggaattcttacgtggca
ggatttggagatcctaaggatgaattctggataggtctggagaacctgcacaaaatcact
tctcagggccagtacgagctgcgggtggacctgagggacaagggggacacggcctacgcc
gtgtacgaccgcttcagcgtgggcgacgccaagagccgctaccgcctgcgcgtggatggc
tacagcggcactgcaggtgactccatgacctaccacaatggaaggtccttctccaccttc
gacaaggaccacgattctgccatcaccaattgtgctctgtcatacaaaggagccttctgg
tacaagaactgccaccgagtcaacctgatgggcagatatggtgacaacagccacagccag
ggcgtcaactggttccactggaagggccacgagtattccatccagtttgcagagatgaag
ctgagaccctccagcttccggaacctggaggggcgtcggaagcgagcgtag
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integrated database retrieval system
