Lonchura striata (white-rumped munia): 110482258 Help Entry 110482258         CDS       T05897                                  Symbol COL27A1 Name (RefSeq) collagen alpha-1(XXVII) chain   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism lsr  Lonchura striata (white-rumped munia) Pathway lsr04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:lsr00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     110482258 (COL27A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:lsr00536]     110482258 (COL27A1) Glycosaminoglycan binding proteins [BR:lsr00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    110482258 (COL27A1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Laminin_G_2 GH131_N Laminin_G_3 Motif Other DBs NCBI-GeneID:  110482258 NCBI-ProteinID:  XP_021407065 LinkDB All DBs Position 17:2844260..2985470 Genome browser AA seq 1743 aa AA seqDB search MEPESEPVSRLRATAAGRGGFCFLWTILCFTWFLGFTQGNSEDVDVLQRLGLSGKRPSSG WSSSRSVPQGVIPFKSGVIFTQRARVEAPLSTLLPAGSSSDLLLVLSLCSHRINNAFLFA VRSKKKKLQLGVQFVPGKIIVYVGHKRSVYFDYNVHDGQWHNMAINIRGQTVTLFTSCGK RRVHADLHFKKDEALDPHGSFLFGKISQHAVQFEGAICQFDIYPSAKAAHHYCKYLKKQC RQADTYRPNLPPLIPLLPRDPSASPSTPQRTEPSLQGLKNLTTAAPNLEVGRVTAPLKTR GSSTTTPTLLSTPPSRPRLTTKATKITVAPPVPSSTKSQVPTQSPRGTGTTLRVSQTTPS TRREKTQTPLPTAKRAPPTSQSLVTASRKASEQETKKKISQKPTVESPEAPSTVKPPRRV TDNTTSNVHLVTLKPTPQKPSRGPIPKKPSPTRRVDPSIIPLVYTKPPLGSARPTSRARA FNLTTLAATDAYQIFDPLGPTPFPFLLGFPGVKGERGPQGPPGLPGLPGPPGKRGSRGPP GPHGNPGSPGPPGLKGQKGDPGLSPGKARNGQKGDVGLPGLTGFPGPPGRKGYKGYPGPL GHPGDQGERGPAGSPGAKGYPGRQGLPGPIGESGPKGTRGYIGLPGLFGLPGADGERGIP GVPGKRGKMGRPGFPGNFGERGPPGIDGNPGELGAPGPPGVLGLIGDMGPVGPIGYPGPK GLKGLMGNPGEHGLKGDKGDQGRAGVPGDIGFQGDKGSQGLPGVPGARGKAGPLGKVGDK GPVGFPGPPGPEGFPGDIGPPGENGPEGLKGKPGARGLPGPRGLPGQEGDEGPLGPPGVP GPEGRSGRKGFPGTPGPNGPKGEPGNRGRPGKVGEQGLMGFIGPVGEPGIAGEKGDRGPV GPPGPPGVKGSMGHPGMPGGVGFPGIPGPTGPAGARGAPGIRGTKGRRGARGPDGPVGEP GARGAKGRPGEPGRVGPDGLQGKMGETGATGARGFPGIQGPSGPPGAKGAPGDPGPQGPQ GPPGPLGEMGLKGPPGSMGQPGPAGEPGMKGDPGQLGIPGEQGLVGQRGESGLEGDTGQL GPDGIKGDKGEQGPEGEKGEKGSEGLKGKEGSPGYPGIPGVRGPEGKPGKQGEKGKPGQK GSKGYQGQLGEMGSPGKQGPKGNQGPKGSRGTLGPMGAPGRMGAQGDPGLKGYQGHAGPP GPIGPPGPKGEKGQQGDDGKVEGPQGPPGDRGPVGDRGDRGEPGDTGYPGQEGLDGERGK PGQQGLPGDPGSPGKPGAKGSKGDVGQKGKQGAQGSAGSRGSPGILGLPGPRGVVGRQGQ EGAPGVDGVPGKDGVPGMLGEQGDDGEEGVTGMPGKRGNPGVPGLPGAQGPPGFKGERGL PGQTGQTGKRGSPGGTGLPGSPGEPGAKGQPGDFGEAGFPGIAGLFGPKGPPGDLGFKGI QGPRGPPGLMGKEGIIGPLGIQGPMGSPGPKGDKGSRGEMGLQGPRGPPGPRGHPGPPGP PGVPASFQQDGFGAAFQTLIDSNTALKREGYQNPDLLMLDHGGEIFKTLHYLSNLIQSIK RPLGTKENPARICRDLMNCEQKMTDGTYWIDPNLGCSSDTIQVICNFTNGGQTCLSPVTV SKLDFDIGRVQMNFLRLLSSEVVQHITIHCLNTSVWREGSSESPSEKAVRFRAWNGQVFE ASGQLRPEVAADDCKIKDGRWHRTLFSFRTQDPQQLPIVSIHNLPPSQPGQQYHLEVGPV CFL NT seq 5232 nt NT seq  +upstreamnt  +downstreamnt atggagccggaatcagagccggtctccagactcagagctacagcggcaggcaggggggga ttctgctttctctggacaatattgtgttttacctggttcctgggattcacacagggaaat tcagaagatgtggatgttcttcaaagactgggcctgtcagggaaaaggccatcgagtgga tggtcctcctcacgttcagttcctcaaggagtcattcctttcaaatcaggggtcatcttc actcagcgagcccgtgtcgaagcaccgctcagcaccctcctccccgcaggctccagctct gacctgctcctggtgctgagcctctgctcccaccgcatcaacaacgcttttctctttgct gtcaggagcaaaaagaaaaaactgcagctgggggtccagtttgtgcctgggaagatcatc gtgtatgtgggccacaagcgctctgtatattttgattacaatgtccacgatggccagtgg cacaatatggccatcaacattcgtggccagacagtcactttatttacttcttgtgggaag cgcagagtacatgcggatttgcattttaaaaaggacgaggcgttggatccacacggatct ttcctctttgggaagataagccagcacgccgtgcagtttgaaggagccatctgccagttt gatatttatccttccgccaaggcagctcatcattactgtaaatacctgaaaaaacagtgc aggcaagcagatacctaccggccaaacctgccccctctcatccccctcctgcccagggat cccagtgcctcccccagtaccccgcagcgaacagagccctcgctgcagggtctgaaaaac ctgaccactgctgccccaaatttggaggttggcagggtcactgcacccctcaagacgagg ggttcaagtacaacaacccccacattgctgtcaaccccaccatcacggccgagactgact accaaagccaccaagatcacagtggccccgcctgttccatcaagtaccaaatcacaggta cccacccagtcccctcggggcacggggacaaccctcagggtgtctcagaccacgcccagc acgcgcagggagaaaactcaaactccccttcccactgctaaaagggccccaccaacgagc cagagcctggtcacggccagcaggaaagcgtccgagcaagagaccaaaaagaagatcagc caaaaaccaactgttgagtcccctgaagcgcccagtactgtaaagccaccgaggagggtg actgataacacaacgagcaatgtccacctggttaccctaaagccaaccccgcagaaacca agccgtgggcccatcccaaagaagccgtcccccaccagaagagtagatcccagcatcatc cctctggtgtacaccaagccacccctggggtctgcccggcccacctccagagccagggcc ttcaacctcacaaccctggctgccacagatgcctatcagatctttgaccccttgggaccc actccgtttccgtttttactgggatttccaggagtgaaaggagagagaggacctcagggc ccaccaggtctgccaggcttaccaggaccccctggcaagagaggttctcgaggtccccca ggcccccatggaaaccctggctcacctggccccccaggactgaaaggtcagaaaggtgat cctgggctgtcacctggaaaagctcgcaatgggcagaagggagatgtgggcttacctggt ttaactgggttccctggaccacctggtagaaagggatataaaggctaccctggaccacta ggtcaccctggagaccagggtgaacgaggaccagctggaagtccaggtgccaaaggttat cctggcaggcagggtttacctggccccataggggaatctggcccaaaaggcactcggggc tatattggtctcccaggattatttgggctaccaggagccgatggagaacgagggatccct ggagttcctgggaagaggggcaagatgggtaggccgggttttcctggtaattttggagaa cgagggcctccaggcatcgatgggaaccctggagaattgggagccccaggtcctcctgga gtccttggactcattggtgacatgggccctgttggaccaattggctatccaggaccaaaa ggattaaaggggctgatgggaaaccctggagagcatggactgaaaggtgataagggtgat cagggaagagcaggtgttccaggagatatcggcttccaaggagacaagggcagccagggt ttgcctggggtccctggggcacgagggaaggcaggccccctgggaaaagtcggtgacaaa ggaccagttgggtttccaggaccacctggcccagagggcttcccaggtgacattggccca ccaggagaaaacggtcctgaaggtctgaagggaaagccaggagcacgaggtttacctggg ccaagaggactgcctggacaagagggagatgaaggacccttaggaccaccaggagtccct ggtccagagggtcgatctggtcggaaggggtttccaggaacacctggtcccaatggtcca aagggtgagccaggaaaccgtggccgaccagggaaagttggtgagcagggtctaatgggt ttcattggtccggtgggggagcctggaatagcaggagaaaagggtgaccgtggcccagtg ggacccccaggccctccaggagtcaaggggtcgatggggcaccctgggatgccaggagga gtgggttttcctgggatccctggaccaacaggtccagcaggagcccgtggtgctccaggg atccgaggcacgaaaggccgcaggggtgccagagggcctgatggacccgtaggcgagcca ggggcgcgaggtgccaagggccgaccaggggagccaggcagggtgggcccagatgggctg cagggcaagatgggggagactggggcgactggagcacgtggcttcccaggtatccaagga ccttctggacctccaggagcaaaaggggctccaggcgacccgggtccccaaggaccacag gggccacccgggcctttgggagaaatggggcttaagggaccgccaggctcaatgggacaa cctggtcctgcaggtgaacctggcatgaagggtgatcctggccagctgggaatccctgga gagcaaggtctcgttggacaaagaggagaatctgggctggaaggggacactggacagctt gggccagatgggatcaagggagacaaaggagagcaaggcccggaaggagagaaaggagaa aaaggcagtgaaggactgaagggaaaggaaggatctcctggatatcccggcatcccaggt gtccgaggaccagaagggaaaccaggaaaacagggggaaaagggcaagcctggccagaag ggcagcaaaggctaccaggggcagctcggcgagatgggatccccagggaagcaggggccg aaggggaaccaaggccccaaaggatcccgaggtaccctgggaccgatgggagctccagga aggatgggtgctcaaggggacccaggcttaaagggttaccagggacatgcaggaccaccg gggccaattggaccaccagggccaaagggggaaaagggacaacaaggtgatgatgggaag gtagaaggcccacagggaccacctggagatagaggccccgttggtgacagaggtgaccga ggggagcctggagacactggttatcctggtcaggaagggcttgatggagaaagaggaaaa cctgggcagcaaggcttaccgggagatcctgggtcaccaggcaagccaggagcaaaggga tccaaaggtgatgtgggtcaaaaaggaaagcaaggagcacagggcagtgcaggaagcagg ggctcaccgggcatccttgggctaccaggtcctcgaggagtggtgggaaggcagggtcaa gagggtgcccctggcgtggatggagtgcccgggaaggacggcgtgcctgggatgctggga gagcagggtgacgatggggaagaaggtgtgaccgggatgccaggcaagagagggaacccc ggtgtgccaggactcccaggggcccagggaccaccaggattcaagggtgaaagaggattg cctggacagactggccaaacagggaagcgaggatcaccgggaggaacgggccttccaggg agccctggggagccaggagccaaaggacagccgggagacttcggtgaggcaggattccca gggattgcaggactgtttgggccaaaggggcccccaggagaccttgggttcaaaggcatt cagggaccacgtgggccgccgggtctcatgggaaaagaaggaattattggtcctctgggc attcagggtcccatgggaagccctgggcccaagggagacaaaggcagccgtggggagatg ggtcttcaaggtccaaggggtcctccaggcccacgaggacaccctggccctccgggaccg ccaggagttccagcctcatttcaacaagatggctttggggcagctttccagacactgatc gactccaacaccgcgctcaagagagagggttaccaaaatccagaccttctcatgctggac catggaggggagatctttaagactctacactacctcagcaacctcattcagagcatcaaa agacccctgggaaccaaggaaaaccctgcacgcatctgccgggacctcatgaactgtgaa cagaagatgaccgatggtacctactggattgacccaaaccttggctgctcctcagacacc atacaggtcatctgtaacttcaccaacggcggccagacatgtctcagccctgtcactgtc tccaagctggattttgacatcgggagagtccagatgaacttcctgcgactgctgagctca gaggtggtgcagcacatcaccatccactgcctgaacacctctgtgtggcgggagggctcc tctgagagcccctcggaaaaagccgtgcgcttcagggcctggaacgggcaggtgttcgag gccagcgggcagctcaggccagaagtggcagctgatgattgcaagatcaaggacgggcgc tggcaccggaccctcttttccttccggacacaggaccctcagcagctgcccattgtcagc atccacaacctgcccccctcccagccaggacagcaatatcacctcgaggtcggccccgtc tgcttcctttga

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