Lonchura striata (white-rumped munia): 110482312
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Entry
110482312 CDS
T05897
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110482312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsr03041
]
110482312
Enzymes [BR:
lsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110482312
Spliceosome [BR:
lsr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110482312
Complex C
U4/U6.U5 tri-SnRNP related factors
110482312
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
110482312
NCBI-ProteinID:
XP_031363568
LinkDB
All DBs
Position
Unknown
AA seq
821 aa
AA seq
DB search
MSPVGVSLWACPIGRVPIGCVPVGVSCGRVPLGVSRWACPGGRVPVGLERWVSGQLQELL
GLSGRHVPAFLVALARRSRSLEELLERLRETEALRVEEPRVREFARQLWDKVPRAAPREP
PGRAAERAALELQRQNRGYRLVESDEEEGPGPAGPAYEEAQKRLKMAEEDQKALIPELRK
RSRREYLAKREREKLEELEQEIQDEELLFGEEALTAAERRELRYKRRLRDLARDYKRAGA
QEQLERSSRYHIPQETRDKVSRGEIPDLYLGNPKFIPEKPQNHTWGGAAATTSRRRRGTS
VIMVDEAHERTLHTDVLFGLIKDIARFRPQLKVLVASATLDTERFSAFFDHAPVFRIPGR
RFPVDIYYTKVTGPGGDRPVSLVPKVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDL
ASYSVIMVDEAHERTLHTDVLFGLIKDIARFRPQLKVLVASATLDTERFSAFFDHAPVFR
IPGRRFPVDIYYTKQRCPRRQEEIEACVELLQERCRRLGSRLPELLVLPIYANLPSELQA
RIFQPTPPGARKVVVATNIAETSVTIDGIVYVLDPGFCKQKSYSARTGMESLVVTPCSRL
PVEPMLAKMILASEQYGCTEEVLTVAAMLSVNNAVFYRPKDKVLHADSARVAFSVPGGDH
LVLLNVYNQVWGQRGHLSQSLPVTLCPPQAITAGFFYHTARLIPVHPSPSQSLPVTLCPP
QAITAGFFYHTARLARGGYRTVKHQQPVFIHPNSALFALQPRWVLYHELVCTSKEFMRQV
LEIDSAWLLEVAPHYYQAKELEDGSGRKMPKKAGKSREELG
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgtccccggtgggcgtgtccctgtgggcgtgtcccattgggcgtgtccccattgggtgt
gtccctgtgggcgtgtcctgtgggcgtgtcccattgggtgtgtcccggtgggcgtgtccc
ggtgggcgtgtcccggtgggnctggagcgctgggtgtccgggcagctgcaggagctgctg
ggcctcagcggccgccacgtccccgccttcctggtggcgctggcgcggcgcagccggagc
ctggaggagctgctggagcggctgcgcgagaccgaggcgctgcgcgtggaggagccgcgc
gtgcgcgagttcgcgcgccagctctgggacaaggtgccgcgggcggcgccgcgggagccg
ccggggcgcgcggccgagcgggcggcgctggagctgcagcgccagaaccgcggctaccga
ttggtggagagcgacgaggaggaggggccgggccccgccggccccgcctacgaggaagcc
caaaaacggctcaaaatggctgaggaggaccagaaggccttgatccccgagctgcgcaag
cgctcgcgccgcgagtacctggccaagcgggagcgggagaagctggaggagctggagcag
gagatccaggacgaggagctgctcttcggggaggaggcgctgacggcggccgagcgccgc
gagctgcgctacaaacggcgcctgcgcgacctggcccgcgactacaaacgggccggggcc
caggagcagctggagaggagcagccgctaccacatcccgcaggagacgcgggacaaggtg
agcaggggggaaatcccggatttgtacctgggaaaccccaaattcatacctgagaaaccc
caaaatcatacctggggaggagcagccgctaccacatcccgcaggagacgcgggacaagc
gtgatcatggtggacgaggcgcacgagcgcacgctgcacacggacgtgctcttcggcctc
atcaaggacatcgcgcgcttccggccgcagctcaaggtgctggtggcctcggccacgctg
gacaccgagcgcttctcggccttcttcgaccacgcgcccgtcttccgcatccccggccgg
cgcttcccggtggacatctactacaccaaggtgactggccccgggggtgacaggcccgtg
tcccttgtccccaaggtggggtacagcatccgcttcgaggactgcacgtcggagcgcacg
gtgctcaagtacatgacggacgggatgctgctgagggagttcctgaccgagcccgacctg
gcctcctacagcgtgatcatggtggacgaggcgcacgagcgcacgctgcacacggacgtg
ctcttcggcctcatcaaggacatcgcgcgcttccggccgcagctcaaggtgctggtggcc
tcggccacgctggacaccgagcgcttctcggccttcttcgaccacgcgcccgtcttccgc
atccccggccggcgcttcccggtggacatctactacaccaagcaacgatgtccccgacgc
caggaggagatcgaggcctgcgtggagctgctgcaggagcgctgccgccgcctgggctcg
cgcctgcccgagctgctggtgctgcccatctacgccaacctgccctcggagctgcaggcc
cgcatcttccagcccacgccccccggcgccaggaaggtggtggtggccaccaacatcgcc
gagacgtcggtgacgatcgacggcatcgtctacgtgctggaccccggcttctgcaagcag
aagagctacagcgcccgcacgggcatggagtccctggtggtgacaccctgctcgcggctg
ccggtggagccgatgttggccaagatgatcctggcgagcgagcagtacggctgcacggag
gaggtgctgacggtggccgccatgctctcggtgaacaacgccgtgttctaccggcccaag
gacaaggtgctgcacgccgacagcgcccgcgtggccttcagcgtgcccggcggcgaccac
ctggtgctgctcaacgtctacaaccaggtgtggggacagcggggacatttatcccagtcc
ctcccagtaacgctgtgtcccccccaggccatcacggcggggttcttctaccacacggcg
cggctgatcccagtccatcccagtccctcccagtccctcccagtaacgctgtgtcccccc
caggccatcacggcggggttcttctaccacacggcgcggctggcgcggggcgggtaccgc
acggtgaagcaccagcagccggtgttcatccaccccaacagcgccctgttcgccctgcag
ccccgctgggtgctctaccacgagctggtgtgcacctccaaggagttcatgagacaggtg
ctggagatcgacagcgcctggctgctggaggtggccccccactattaccaggccaaggag
ctcgaggacggcagcggccgcaaaatgcccaaaaaagccggaaaatcgcgggaggagctg
ggctga
DBGET
integrated database retrieval system
