Lonchura striata (white-rumped munia): 110482348
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Entry
110482348 CDS
T05897
Symbol
TAF4B
Name
(RefSeq) transcription initiation factor TFIID subunit 4B
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110482348 (TAF4B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsr03021
]
110482348 (TAF4B)
03036 Chromosome and associated proteins [BR:
lsr03036
]
110482348 (TAF4B)
Transcription machinery [BR:
lsr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
110482348 (TAF4B)
Coactivators
SAGA/TFTC/STAGA complex
110482348 (TAF4B)
Chromosome and associated proteins [BR:
lsr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
110482348 (TAF4B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
110482348
NCBI-ProteinID:
XP_031359881
LinkDB
All DBs
Position
2:106257115..106327114
Genome browser
AA seq
833 aa
AA seq
DB search
MSASAAPVRLMPGGHPEQAAASTPAAGSAPERGRPAAAVPGGPAAAPPRPAAAPAGTPAV
RGAAPGGPRPVAPKGPPTAALQLPANLQLPPGTVLIRSSNGHLMLVSQQSIAKPQNQTQN
STSVRPSVPTSTPAVRICAVQNSGTQLVKKIAAAPVKTLSQTTNAVVSTVQTPAVIQPAA
ATASVTTVTAVKPLSTGTPVKLPVTGPPAQAISQKAVSVKAEGTTVAQTSTSTEMLENVK
KCKNFLATLVKLASSGPQALEMGQNVKNLVQNLLEAKIEPEEFTKKLYIELKSSPQPYLV
PFLKKSVLALRQLMPNPQSFIQQCLEQTAPTQEVVSTCPSAVPAPVTEAATSTVATTALP
AVKPVPASAAATAPLVITPVLASTSAAAPLQAVKAIPSPAVGPASLRPAAPVLGTPVASA
GLTAGRPGKLLFTSTLPAPSLQAAKPVLVSAVASSAATPLQPLKPVIGTPVGIKISQPSS
MVARSVGAQQVVKVKQLVVQQPSGTIVKQVSTLPQPSVLTLQTSAEKKVPLNALVQTNQF
PAGSTLKRITLPRNKIWSLQASPVQEAKMKENGATSFRDEDDLNDVTSMAGVNLSEENAY
ILATNSELIGTVIHSCTDEPFLSLEALQSKIMNIGKRHDIMELNSDVVNFISHATQERLR
GLLEKLTVIAQHRVSTHKGSDKYIVCSDTRAQLRFLEKLDHLEKQRKDEEEREMLLRAAK
SRSNKEDPEQLRLKQKAKEMQQLELAQMQQREANLTALAAIGPRKKRPLDSSNVGSGLEG
LNSNGIAGSSGFSLTKQMLCPRVTRVCLRDLIFCMEQEREMKHSLRLYHALLK
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcctcggcggcccccgtcaggctgatgcccggcgggcacccggagcaggcggcc
gccagcaccccagccgcgggctcggcgcccgagcggggccgccccgccgccgctgtgccc
ggcggccccgctgccgccccgccgcgtcccgcggccgcccccgcggggaccccggcggtg
cggggggccgctcccggcggcccgcggccggtggcgcccaaggggccgcccacggccgcc
ctccagttgccggccaacttgcagctgcccccaggaactgttcttatcagaagcagtaat
ggtcacctaatgctggtatctcaacagtcaatagcaaaaccacagaaccagacacaaaac
agcacaagtgtgagaccatctgtgccgaccagcacgcctgcagtcagaatatgtgctgtg
cagaattctggcacacagttagtaaagaaaatagcagctgctcctgtgaaaacgttatcc
caaacaacaaatgctgtggtttctactgttcagacacctgctgtaatacagccagcagct
gcaacagctagtgttactacagttactgctgtaaagcctttgagtactggaacacctgta
aaacttccagttacaggaccacctgcacaagctatctcccaaaaggcagtctctgtgaaa
gcagagggcacaacagtagcacagaccagcacttctacagagatgctagagaatgtgaag
aaatgcaagaattttcttgctactctagtaaaattggcatctagtggacctcaagccctt
gagatggggcagaatgtgaagaatctggtgcaaaacctactggaagcaaaaattgagcca
gaagaatttacaaaaaagttgtacatagagcttaagtcatctccacaaccatatttagtt
ccttttctcaagaaaagcgtgcttgccctaaggcagctaatgcctaatcctcagagcttt
atccagcagtgtctggagcagacagccccaactcaagaagtggtttctacttgtccctct
gcagtaccagctcctgtgacagaagcggcaacttcgactgtagcaacaactgctcttcca
gctgtaaaacctgtgcctgcctctgcagcagccacagcccctctcgttatcacaccagtc
cttgccagcacatcagcagctgctcctctgcaggctgtgaaggccattccttcccctgcc
gtggggccagcatcgctcaggcccgcagctcccgtcctcggcacgcccgtggcatcggcc
gggctgaccgctggccggcctggcaagctgctcttcacctccacgctgccagcgccctcc
ctgcaggctgcaaagccagtgctggtctctgcagtggcatcttcagcagcaacccctctc
cagcctctgaaaccagtcatcggaaccccagttggtattaagatctctcagcccagctcc
atggtggcgcggtcagtgggtgctcagcaggtggttaaagtgaagcagctggtagtccaa
caaccatcgggaaccattgtcaagcaagtatccacactcccacagccctcagtgctcacc
ctacagacatctgctgagaagaaggtgcctctgaatgcacttgttcaaaccaaccagttt
cctgcaggttccactctgaagcgaattaccttgccaagaaataaaatatggtcgcttcaa
gcatctcctgttcaggaagcgaaaatgaaagagaatggagcaacatccttcagagatgaa
gatgacctaaatgatgtgacttctatggctggggttaatctcagcgaggagaatgcctat
attttggcaacaaactctgagctcattggcacagtgattcactcttgcacagatgaacca
tttctgtctttggaagctcttcagagtaagatcatgaacataggtaaaaggcatgacatt
atggaacttaactctgatgttgtgaacttcatctcccacgctacacaggagagattacga
ggactcctagaaaaactaactgtaattgctcagcacagagtatcaacccacaagggaagt
gataagtacattgtatgtagtgacaccagagcacaactgagatttcttgagaagctcgat
cacctggaaaagcagagaaaagatgaagaggaacgtgaaatgttacttcgagcagccaag
agccgttccaataaagaagatccagagcaactgcggttaaagcagaaagcaaaagagatg
caacagttggaattagcacagatgcaacaaagagaagccaacctcacagctttggcagcc
attggaccaaggaagaaaagaccattggattcatcaaacgttggatctgggctcgagggt
ttgaacagcaatggaattgctggatcatcaggttttagccttacgaagcagatgctctgt
ccaagagtaacccgtgtctgtctcagggacttgatattctgcatggaacaagagagggag
atgaagcattctctacgcttgtaccatgctcttctgaagtga
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