Lonchura striata (white-rumped munia): 110482374
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Entry
110482374 CDS
T05897
Symbol
NPC1
Name
(RefSeq) NPC intracellular cholesterol transporter 1 isoform X1
KO
K12385
Niemann-Pick C1 protein
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
lsr04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
110482374 (NPC1)
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
110482374 (NPC1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lsr02000
]
110482374 (NPC1)
Transporters [BR:
lsr02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
110482374 (NPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NPC1_MLD
NPC1_N
Sterol-sensing
Patched
MMPL
ACR_tran
Motif
Other DBs
NCBI-GeneID:
110482374
NCBI-ProteinID:
XP_021407247
UniProt:
A0A218V1G1
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All DBs
Position
2:complement(105164882..105191633)
Genome browser
AA seq
1285 aa
AA seq
DB search
MGTPQGSPGRSGLGFLVLLLLLPPVRVLPQACVWYGECGVASGDKRYNCAYDGPPIALPE
DGYDLMQELCPGLFFGNVSTCCDVHQLQTLKNNLQLPLQFLSRCPSCFYNLMNLFCELTC
SPNQSDFLNVTSTIPYYDPLLKENKSSITELQYFIGDRFANAMYNACKDVEAPSSNVKAL
GLLCGKDVKDCNATNWIEYMFSKDNGQTPFSINPIFSDVPVHGMNPMNNATKGCNESMDD
STGPCSCQDCSIVCGPKPQPPPLPPPWLLFGLDAVYVIIWISYMGFLLIFFALVFGVWCY
RRRHFVSEYTPIDSNVAFSVNSHRDNGNITCGERLGERFENGLRMTFTSWGAFCVRNPRP
VILFSVVFIAMCCSGFVYIKATTNPVDLWSAPSSQARKEKEYFDTHFGPFFRTEQVIIQA
PKSHPDTYSPYPSGEDVPFGPPLTKDILHQVLDLQDAIVNITASYDNETVMLKDICLAPL
APYNNNCTILSVLNYFQNSHSVLDHTVGDEFFVYADYHTHFLYCVRAPASLNDTSLLHDP
CLGTFGGPVFPWLVLGGYDDDNYNNATALVITFPVNNYYNDSKKLMKALAWEKEFINFLM
NYNNSNLTISFSAERSIEDEINRESNSDISVVLISYIVMFVYISIALGHIQSCRRLLVDS
KITLGIAGILIVLSSVACSIGIFSYFGIPLTLIVIEVIPFLVLAIGVDNIFIMVQTLQRD
ERLQGETLDKQIGRVLGDVAPSMFLSSFSETVAFFLGTLSTMPAVRTFSLFAGMAVLIDF
ILQVTCFVSLLGLDIKRQESNRLDVLCCIKSSEEISGVQRSENMLFLFFKNLFSPYLLKD
WMRPIVIAVFVGILSFSAAVIHNVEIGLDQSLSMPDDSYVIDYFSNISKYLHAGPPVYFV
LEEGHNYTSLEGQNMVCGGTGCNNDSLVQQVFNAAEIGSYTRIGYAPSSWIDDYFDWVKP
QSSCCRVYNATGQFCNASVSDPSCTRCRPLTQEGKQRPQGEDFMTFLPMFLSDNPNPKCG
KGGHAAYNSAVNFINNKTEVGATYFMTYHTVLKTSSDFIDAMRKARIIADNITETMGIKE
KNYRVFPYSVFYVFYEQYLTIVHDAIFNLCISLGSIFLVTTVLLGFEVWAAVVVSITIAM
IIVNMFGVMWLWGISLNAVSLVNLVMSCGIAVEFCSHVTRAFTISTKGSRVERAEEALSH
MGSSVFSGITLTKFGGIVVLAFSKSQIFKIFYFRMYLAMVLLGATHGLIFLPVLLSYIGP
SVNKAKTRAAQERTRGTERERLLYF
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atggggacccctcaaggcagccccgggcgaagcggcctcgggttcctcgtcctcctgctg
cttctgccgcccgtgcgggtacttccccaagcgtgtgtctggtatggagaatgtggagtt
gcttctggagacaagaggtacaactgtgcttatgatgggccaccaatagcactaccagaa
gatggctatgacttaatgcaggaactctgtccaggtttattctttggcaatgttagcact
tgctgtgatgttcatcagcttcagactttgaaaaataacttgcagctgcctctgcagttt
ctctccagatgtccatcatgtttttacaacttgatgaacctcttctgtgaactgacttgt
agtccaaatcagtctgacttcttgaatgttacaagcaccataccttactatgatcccctt
ttaaaagagaacaaaagtagcattacagagctgcagtacttcattggagatcgatttgca
aatgcaatgtacaatgcctgcaaggatgtggaggctccatcgagcaatgttaaagcactg
gggttgctgtgtggaaaggatgtcaaggactgcaatgcaaccaactggattgagtacatg
tttagtaaagacaatgggcaaactcctttcagcataaatccaatcttttcagatgttcct
gtccatggaatgaaccctatgaataatgctaccaaaggctgtaatgagtccatggatgat
tcaacaggaccatgcagttgtcaggactgttcaattgtctgtggtccaaaacctcagccc
cctccattgcctcctccttggctattgtttggtttggatgctgtgtatgtcatcatctgg
atctcatacatgggctttctactcatattttttgcactagtttttggagtctggtgttac
aggaggcggcactttgtctcagagtacaccccaattgacagcaatgtagccttttccgtg
aattcccaccgtgacaatggaaacattacctgtggtgaaaggcttggtgaaaggtttgag
aatggcctaaggatgacattcacatcatggggggctttctgtgtcagaaatccacgtcct
gttatcctcttctctgtggtcttcattgcaatgtgctgttcaggctttgtatatattaaa
gcaactacaaatcctgtagatctctggtcagcaccaagcagccaagcccgcaaggagaag
gaatactttgacacacactttggacctttcttccgtactgagcaagttattattcaagca
ccaaagagccacccagacacctactcgccttacccatcaggagaagatgtaccttttggg
cctccccttaccaaagatattctccatcaggtactggatttgcaggatgctattgtcaac
ataactgcttcttatgacaatgagactgtaatgctgaaggacatttgcctggctcctctt
gctccctacaacaacaactgcactatcctgagtgtactgaactactttcagaacagccat
tctgttctggatcacactgttggggatgagttctttgtctatgctgattaccacactcac
ttcttatactgtgttcgggctccagcatcactgaatgacacaagcttgcttcacgatccc
tgcttaggaacatttggtggacctgtatttccgtggctggtgttgggaggatatgatgat
gataactataataatgctacagctcttgttattacttttcctgtcaacaactactacaat
gattcaaaaaagctgatgaaagccttagcatgggaaaaagaatttattaactttctgatg
aactacaataattcaaacttaacaatatcattttctgctgaacggagtattgaagatgag
atcaaccgcgaaagcaacagcgatattagcgttgtgttgataagctatattgtgatgttc
gtgtacatctcgatagctttgggacatatccagagctgtagaagactgctggtggattcg
aagatcactctgggcattgcaggcatcctgattgtactgagctcagtagcatgttctata
ggcattttcagctactttggaatcccactgacactgattgtgatagaagtaattcctttc
ttggtgctggctattggagtggacaatatcttcattatggttcagacacttcagagagat
gaacgccttcagggtgaaactctggataaacagattggcagagttttgggagatgtggca
cccagtatgtttctctcatccttttcagagactgtggcattctttcttgggacactgtct
acgatgccagcggttcgcacgttctccctgtttgctggaatggctgtgctcatagacttt
attcttcaagtcacttgcttcgtgagtctcctgggcttggatattaagcgtcaagagagt
aatagactggatgttctgtgttgcatcaaaagcagtgaagaaattagtggagtccagcgt
tctgagaacatgttatttctgttcttcaaaaatctgttttctccatatctgcttaaggac
tggatgagaccaatagtaatagcagtgtttgtgggtatcctgtcattcagtgcagcagtt
atacacaatgtagagattggactggatcagtctctttcaatgccagatgactcctatgta
atagattacttcagcaacatcagcaagtacctgcatgcgggtccgcctgtctactttgtc
ctagaagaaggacacaactacacctctttggaagggcagaacatggtgtgtggtggaaca
ggatgtaataatgattcacttgtccagcaagtcttcaatgctgcagaaattggcagctac
acaaggataggctatgccccatcatcctggattgatgactactttgactgggtgaagcca
cagtcatcctgttgcagagtctacaatgccactggacagttttgcaatgcttcagtcagt
gatccatcctgcactcgttgtcgaccactgactcaagaaggcaagcagagaccacagggt
gaagacttcatgacctttttgccaatgttcctatcggacaaccctaatcctaaatgtggc
aaaggaggacatgctgcatataattctgctgtcaactttataaacaacaaaactgaggtt
ggagccacttatttcatgacttaccatactgtactgaaaacatcatctgattttattgat
gctatgaggaaagctcggattatagcagacaatattactgaaaccatgggcatcaaagag
aagaactaccgggtgtttccttacagtgtgttttatgtcttctatgaacaatacttgaca
attgtgcacgatgctatctttaacctctgcatctctttgggatcaatatttctggtgaca
actgtgcttcttggttttgaagtatgggctgctgttgtggtttcaataactattgctatg
ataattgtcaacatgtttggagtgatgtggctctggggcatcagcttgaatgcagtttca
ttagtaaatcttgtcatgagctgtggtattgctgtggaattctgcagtcatgtgacaaga
gcattcaccatcagtaccaagggcagtagagtggagcgtgcggaagaagctctgtctcac
atgggcagctcagttttcagtggtatcacattgaccaagtttggagggattgtagtattg
gctttttccaaatctcaaatcttcaagatattctacttcaggatgtatctagctatggtt
ctgctgggagcaacacatggactgatatttcttccagttctgcttagttacataggccca
tcagtaaataaagctaaaactcgtgctgcacaagagaggaccagaggtacagaacgggaa
agactcctctacttctag
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