Lonchura striata (white-rumped munia): 110482474
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Entry
110482474 CDS
T05897
Symbol
VPS50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
lsr
Lonchura striata (white-rumped munia)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsr04131
]
110482474 (VPS50)
Membrane trafficking [BR:
lsr04131
]
Protein recycling
Others
EARP complex
110482474 (VPS50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
EF-G-binding_N
DcpS_C
ERp29
Motif
Other DBs
NCBI-GeneID:
110482474
NCBI-ProteinID:
XP_021407436
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All DBs
Position
2:24086183..24166197
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AA seq
984 aa
AA seq
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MQKIKSLMTRQGLRSPQESVNDLSPIENFRTLTKEELRELHEEPTDPQAQQEIINSIEEV
YFSNDSFDIVKYELERLPPVLSLQELEEYTDKLKQQQAAVSKKVADLILEKQPAYVEELE
RVTSLQTGLQLAAVICTNGRRHLNIAKEGFTQTSLGLLANQRKRQLLIGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT
DTKFQKLQYKDLCTHITSDSYIPCLADLCKALWEVMLSYYRTMQWHENHDQDEADVVSSD
GNNVIGTEENSFDRNYVKKKLEHGLSRIWQDVQLKVKTYLLGTDLSNFKYDDFIFVLDVI
SRLMQVGEEFCGSKSEVLQESIRKQSVNYFKTYHRTRLEELRMFLENETWELCPVKSSFS
ILQLHEFKFLEQSRSPSVSPSKQPASAVSSTGTLFQQYCAAGNPFEIQADSKDDETEDVL
ASNGYESDEQEKSAYQEYDSDSDVPEELKRDYVDEQTGDAPIKSVSRETLRSRKRSDYNL
NKVNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAVYTFFGRNDM
PIPASSLCAPNREQHSARQFESTGLGLSSSRLRTTLNRIQESLIDLEVSADPSGTLTAAE
ERKEKVPSPHLSHLVVLTSGNSLYGLAERVVATESLVFLAEQFEFLQPHLDAVMPAAKKP
FLQQFYSQTVSTASELRKPVYWIVAAKAIDYEQMLLLMANVKWDVKEIMSQHNVYVDALL
KEFEEFNRRLNDVSKRVRIPLPVSNILWEHCIRLANRTLVEGYANVKKCSNEGRALMQLD
FQQFLMKLEKLTDIRPIPDKEFVETYIKAYYLTENDMESWIKEHREYSTKQLTNLVNICL
GTYINKKARQKLLAAIDDTDRPKR
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagatcaagtcgctgatgacccgccagggtctaagaagtcctcaggagagtgtt
aatgacctcagtcctattgaaaactttcggactcttactaaggaggaactcagagaacta
catgaagaaccaactgatcctcaggcacaacaagaaataattaacagcattgaagaagtt
tatttttccaatgactcctttgatattgtgaagtatgagttagagaggcttcctccagta
cttagtcttcaagaactagaagagtacacagacaaactaaaacaacagcaagctgctgta
tctaagaaagttgcagatttaatccttgaaaaacagcctgcatatgttgaggaacttgaa
cgtgttacatcattgcagactggccttcagctagcagcagttatttgcacaaatggaaga
agacacctgaatatagcaaaggaagggttcacacaaactagtttggggctccttgcaaat
cagaggaaacgacagttgcttattggactgctaaaatctctgagaacaataaaaacactg
caaagaactgatgtgcgtttgagtgagatgttggaggaggaggattatccaggagctatt
caactatgcttggaatgccagaaagctgccagcactttcaaacactacagttgtataagt
gagttaaactcaaaactgcaagacactttggaacaaatagaggaacaattggacgttgca
ctttccaaaatatgtaagaattttgatatcaatcattatacaaaggttcagcaggcttac
aggctgcttggaaaaacacagacagcaatggaccagttacatatgcacttcacccaagcc
attcacaacactgtgtttcaagtagttcttggatatgtggagctgtgtgccggaaacaca
gacaccaagtttcagaagttacagtacaaagacctctgtacacacattacctcagacagc
tacattccatgccttgctgatctctgcaaagccctctgggaagtcatgctcagttactac
cggacaatgcagtggcatgagaaccatgaccaagatgaggcagatgttgtgtcttctgat
ggcaacaatgtgattggaactgaagaaaacagttttgaccgcaactatgtaaaaaagaaa
ttggagcatggactttcacgaatatggcaggatgttcaattgaaagtgaaaacgtatctt
ctgggaacagatctgtctaacttcaaatacgatgacttcatatttgtccttgatgttatc
agcaggctgatgcaggttggagaagaattttgtggcagtaagtctgaagttttgcaagaa
tctatcagaaaacaaagcgttaactatttcaaaacataccacagaacccgtcttgaagaa
ctaagaatgtttttggagaatgagacctgggaactttgtcctgttaaatccagctttagt
attttgcagcttcatgaatttaagttcctggagcagtcgcggtccccgtcggtgtcaccg
agcaagcagcctgcctcagcagtttcctcgacggggacgctgttccagcagtactgcgcc
gcaggaaaccccttcgagatccaggccgacagcaaggatgatgagacagaagacgtgtta
gcttccaatgggtatgaatcagatgaacaagaaaaaagtgcctatcaagagtatgatagc
gacagtgatgttcctgaagagttgaaaagagattatgtggatgagcagacaggagatgcc
ccaataaaaagtgtttctcgagaaactctgaggagcagaaagagatcagattataacctc
aataaagtgaatgcacctattctaaccaacactacactgaatgtaataaggcttgttggg
aaatacatgcagatgatgaatattctgaaacctatcgcatttgatgtgatccacttcatg
tcccagctctttgattattatctgtatgcagtctatacattttttggccgaaatgacatg
cccataccagcttcctcactctgtgctcctaacagagaacagcacagtgctaggcagttt
gaatcaacaggactgggcctcagtagcagcagattacgcaccacactgaacagaatccag
gagagtctgattgatctggaggtgtctgctgatccttcaggaactctcacagctgctgaa
gagagaaaagagaaggtgccaagcccacatctcagtcatcttgtagttttgacatctggc
aattctctgtatggcttggcagagagagtggtggccacggaatccttggtatttctggct
gagcagtttgaatttcttcagcctcatcttgatgcagtgatgccagctgccaagaagcct
tttcttcagcagttctattctcagacagtgtcaactgcaagtgaactacgtaaaccagtt
tattggattgttgctgctaaagccattgattatgaacagatgcttcttctcatggctaat
gtgaaatgggatgtgaaggaaatcatgtcacagcacaacgtatatgtagatgcactttta
aaggaatttgaagaatttaacaggaggttgaatgatgtgtctaagagagtccgtattcca
ttgccagtctccaacatcctttgggagcactgcatacgcttggccaatagaactcttgtg
gaaggttatgccaatgtaaagaagtgcagcaatgaaggacgtgccttgatgcaactggat
tttcagcagttcttgatgaaactagaaaagttaacagacattaggcctattccagataaa
gaatttgtggaaacctacattaaagcatactacctgacagaaaatgacatggaatcctgg
ataaaagaacatagggaatattccactaagcagttgaccaatctggtgaatatttgtctg
ggcacctacatcaacaaaaaggcaagacagaagctgttagctgccattgatgacacagac
aggcctaagagataa
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