Lonchura striata (white-rumped munia): 110482488
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Entry
110482488 CDS
T05897
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8
KO
K13191
RNA-binding protein 16
Organism
lsr
Lonchura striata (white-rumped munia)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsr03021
]
110482488 (SCAF8)
03041 Spliceosome [BR:
lsr03041
]
110482488 (SCAF8)
Transcription machinery [BR:
lsr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110482488 (SCAF8)
Spliceosome [BR:
lsr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
110482488 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
110482488
NCBI-ProteinID:
XP_021407451
UniProt:
A0A218U8M6
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All DBs
Position
3:complement(54111496..54278796)
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AA seq
1357 aa
AA seq
DB search
MEAVKAFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN
NVFKSEIIQPLLDMAAGIPPPVVTPVLPSTTAAMSNNTPGTPVTPVTPANVAQSLPDPWV
SQIANTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSLLQALDAGLVVQLQALTAQ
LTAAAAAANTLTPLEQSVSFNKKLMDRFDFGEESEQNEEPKKETPSSQLPLVPESVNNSL
FHQLAEQLQQQNLEHLRQQLLEQQQPQKASPEENQEGNFGSEHSASPSQGSSQQQFLEVE
ANVDDSMDIQQQDMDIDEGQDIAEEEIFEQEEKKSAVRSRSRTRSRSRSRSPRKRRSRSR
SGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTL
WVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAYRALQKLSSGSYKI
GSKIIKIAWALNKGVKTEYKQFWDVDLGVSYIPWEKVKLDDLEGFAEGGMIDQETVNTEW
ETARSSEAAKENTQTTQSATVDKSTVITTQTEAYTQPVTMLQIPVAPAVPAVSLVPPAFP
VTMSVPPPGYSPIPPPPFLRASFNPSQPPPGYMPPPVPPVVPPPVVPPPVVPPVVPTPLV
QPPLPIAQETMKDVPFTGLVLPVGTVTSNLATPTLSAGSVFNPLPINKPESDDKGPHLTD
LISSSENNRSVQSDVSSTSGLVGGVQPPSVSSNSGLTGEGPPSTVSSTSGLAGGVQPPSV
SSSSGLAGGVQPPTVSSNSGLAGGMQLPAVSSSSSLAGGIQPTNASSSSGLMAGVPPPSV
SSSSGLLAGVHPPSVSSSPGLLTGMQPPSVSSSSGVLAGVQPPSVSSNSGLLIMPPPNVS
TSSGLMGVPPPNISSNSGLLAMQHPAVVPNMPHLNISNQRMPGMPLIDIRPGLMPHSPGP
RFPLMQPGIPPQRTIPPPTILDPSLHPPPPRGPFPPGDIFNQTERPFGTPGRQNIDNISN
PEKRLPLGGDNIQQEGDRDYRFPPVENRDNLNRPSPVDVRDSVGRPPVDPREGIGRPPVD
GREHFARPHIDMRENFGRPGIDNLGRREHFGFNSEKHWGQRGDYDEREHHAFPIYGGPKG
FHEDRERFRHVNYRFDSRSGPSWNRGFEQDAHRDFDDRRRPWERQRDRDDRDFNFCREIN
GNRFGRDRMSNNWIPPPHPRVFEYFDGATSQRKADNMPQVNGENTETESQTPTAQVQDDP
ELYEKLTSSVELNKEKNDTEADIESEPVVESTETEGT
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtgaaagcctttaacagcgagttgtactcgctaaatgattacaagccaccc
atttctaaagctaaaatgacacagatcaccaaggcagcaatcaaggctataaagttctac
aagcatgttgtacagagtgttgagaaattcattcaaaagtgcaaaccagagtacaaggtg
cctggtctgtatgtcattgactccattgtgagacagtcccggcatcaatttggacaagaa
aaggatgtatttgcgccaagattcagcaataacatcatcagcactttccagaacttgtac
cgttgtcctggtgatgacaagagtaaaattgttagagtgctaaatttatggcagaagaat
aatgtgttcaagagtgaaattattcagcctctcttggatatggcagcaggaattcctcct
cctgttgtgacccctgtcttgcccagcactacagctgctatgagcaacaatacaccaggt
acacctgtgactccagttaccccagccaatgtggcgcagagtttgcctgatccttgggta
tctcagattgctaacacagacacccttgctgctgttgcacagattttacagagtcctcaa
ggccagcagcttcagcagttgatacagacgctgcagatacagcagcagaaacctcaacct
tcactacttcaagccctggatgccggtctcgttgtccagttacaggcgctcacagcacaa
ctcacagctgcagctgctgctgctaacacacttactccactggaacagagtgtctctttt
aataagaagctgatggacaggtttgactttggggaagaatctgaacaaaatgaagagcct
aagaaggaaactccctcttcccagttgccattagtaccagaatctgtgaacaactcactt
tttcaccaactagctgaacagctacagcagcaaaatttagaacatctaagacaacagctt
ctggagcagcagcagcctcaaaaggcaagccctgaggagaatcaagaaggaaattttggt
tcagaacactctgcatcaccatcacaagggagtagtcaacagcagtttttagaagtggaa
gcaaatgtagatgattccatggatattcaacaacaggacatggatatagatgaaggtcag
gatattgctgaagaagagatttttgaacaagaagaaaagaaatcagctgttcgttcaaga
tcaagaactcgttcaagatctcgttcaaggtcaccaagaaaacgaaggtctagatcacgg
tctggttctcgtaagcggaagcacagaaaacgttcacgctcaagatcaagagaaaggaag
agaaagtcatctcggtcatactccagtgaaagaagggctagggaaagggaaaaagaacgt
cagaaaaagggattgcctcctatacgatcaaaaacactaagtgtttgcagtactactctt
tgggtaggtcaagtagacaagaaggctacacagcaagatttaacaaacttgtttgaagaa
tttggacaaatagagtcaattaatatgattcccccaagaggatgtgcttatgtctgtatg
gtacatagacaagatgcatatcgtgctcttcagaaacttagttctgggtcatataaaatt
ggatctaaaattattaagattgcttgggctttgaataaaggtgtgaaaacagaatacaag
caattctgggatgtggatctgggagtttcctatattccatgggagaaggtgaaattggat
gatttggagggctttgctgaaggtggcatgattgaccaggaaacagtaaatacagagtgg
gaaacagccagaagctcagaagctgctaaagaaaatactcaaacgacgcagagtgctaca
gttgataagagtaccgttataacaacacagacagaagcttacacacaaccagtcactatg
ctgcagattccagtagctccagctgtgcctgctgttagcttggttccacctgcgtttcct
gtcacaatgtctgtccctcctcctggatatagcccaattcctcctccacccttcttgaga
gcaagtttcaacccttcacagccacctccaggttatatgcctcctccagttccacctgtt
gtcccaccacctgttgtcccaccgcctgttgtcccaccagttgttccaacacctttagta
caacctccattaccaattgcacaagagacaatgaaggatgttccttttactggccttgtt
ctaccagttggcacagttactagcaatctagctactccaacattatctgctggaagtgtt
tttaatccgctgccaatcaacaaaccagaatcagatgacaaaggaccacatcttacagac
ctgatttcttccagtgaaaacaatagatctgtgcaaagtgatgtctcaagtacgtctgga
cttgttggaggagtgcagccaccgagtgtctcaagcaattctgggcttactggagaaggg
ccgccatccactgtctcaagtacctctgggcttgcagggggagttcagccacccagtgtt
tcaagcagctctggacttgcaggaggagtgcaaccaccaactgtttccagcaattctggt
cttgcaggaggaatgcagctacctgctgtctccagtagctcatctcttgctggcgggatt
cagccaactaacgcctcaagtagctctggacttatggctggagtgccaccaccaagtgtc
tcaagtagctcagggcttcttgctggagttcatccgcccagtgtctcaagcagccctggc
cttctgacaggaatgcagccacccagtgtgtccagcagctcaggagttctggcaggagta
cagccaccaagtgtttcaagcaactctgggcttctcataatgccaccacccaatgtttca
actagttctggacttatgggagtgccaccaccaaatatttcaagtaattctggacttctg
gcaatgcagcatccagctgtagttccaaacatgcctcatttaaatatcagtaatcaaaga
atgccaggaatgcctcttatagatattcgtccaggcctaatgccccattcgcctggacca
aggtttccattaatgcaaccaggaataccaccacagcgtactattcctcctcccacaatc
cttgatccatctcttcacccaccaccacctcgaggtccttttcctccaggagatattttt
aatcaaacagaaagaccttttggaacaccaggaagacaaaatattgataacatttctaat
ccagagaaaagactaccacttggaggtgataacattcaacaggagggcgacagagattat
cgctttcctccggtggaaaaccgagataatcttaatagaccatctccagtggatgtcaga
gattctgttggacgaccaccagttgatccaagagagggtataggaaggcctccagtagat
ggaagagaacactttgcaagaccacatatagacatgagagaaaattttggaagaccaggt
atagataaccttggccgaagagagcattttggtttcaattcagaaaaacactggggacag
agaggagattatgatgaaagagaacaccatgccttccctatttatggtggccctaaaggc
ttccatgaagacagagagaggtttcggcatgtaaactataggtttgatagtagaagtggt
cctagttggaatagaggatttgaacaagatgctcacagagattttgatgaccgcagaaga
ccctgggaaagacagagggatagggatgacagagattttaatttttgcagagaaattaat
ggaaacaggtttggaagagacagaatgtcaaacaactggatcccgcctccacatccacgg
gtttttgaatattttgatggggccacttctcaacgcaaagctgataatatgccccaggta
aatggtgaaaatacagagacagaaagtcagacaccgactgcacaggtgcaagatgatcca
gaactttatgaaaaactgacatcttctgtcgagctaaacaaagagaagaatgacacagaa
gctgatatagagagtgaaccagtggtagaaagcacagaaactgaggggacataa
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