Lonchura striata domestica (Bengalese finch): 110482619
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Entry
110482619 CDS
T05897
Symbol
SOX5
Name
(RefSeq) transcription factor SOX-5 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
lsr
Lonchura striata domestica (Bengalese finch)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lsr03000
]
110482619 (SOX5)
Transcription factors [BR:
lsr03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
110482619 (SOX5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Exonuc_VII_L
Motif
Other DBs
NCBI-GeneID:
110482619
NCBI-ProteinID:
XP_021407656
LinkDB
All DBs
Position
1A:complement(56126601..56785492)
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AA seq
764 aa
AA seq
DB search
MLTDPDLPQEFERMSSKRPASPYGEADGEVAMVTSRQKVGEEESDGLPAFHLPLHVSFPN
KPHSEEFQPVSLLTQENCGHRTPTSQHNIMEVDGNKVMSSFAPHNSSTSPLKAEEGGRQS
GESLSSTALGTPERRKGSLADVVDTLKQRKMEELIKNEPEETPSIEKLLSKDWKDKLLAM
GSGNFGEIKGTPESLAEKERQLMGMINQLTSLREQLLAAHDEQKKLAASQIEKQRQQMEL
AKQQQEQIARQQQQLLQQQHKINLLQQQIQQVQGQLPPLMIPVFPPDQRTLAAAAQQGFL
LPPGFSYKAGCSDPYPVQLIPTTMAAAAAATPGLGPLQLQQLYAAQLAAMQVSPGGKIPG
IPQGNLGAAVSPTSIHTDKSTNSPPPKNKDEVAQPLNLSAKPKTSDGKSPTSPTSPHMPA
LRINSGASSLKSSVPATLASPSARANTIGYLNDHDAVTKAIQEARQMKEQLRREQQVLDG
KVAVVNSLGLNNCRTEKDKTTLETLTQQLAVKQSEDGKFSHAMMDFNMSGDSDGSAGVSE
SRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTN
LEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEMRQY
FNVGQQAQLPMATAGVVYPGAIAMAGMPSPHLPSEHSSVSSSPEPSMPVIQSTYGVKGEE
PHIKEEMQPDDANGEIYDEYDEEEDDPDADYGSDSENHIAGQAN
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgctaactgaccctgatttacctcaggagtttgaaaggatgtcttccaagagaccagcc
tctccgtatggggaagcagatggagaggtagccatggtgacaagcagacagaaagtggga
gaagaggagagtgacgggctcccagcctttcaccttcccttgcatgtgagttttcccaac
aagcctcactctgaggaatttcagccagtttctctgctgacgcaagagaactgtggccat
aggactcccacttctcagcacaacataatggaagttgatggcaataaagtgatgtcttca
tttgccccgcacaactcatctacctcacccctgaaggcagaagaaggtgggcgccagagt
ggagagtccttgtccagcacagccctgggaacccccgagcggcgcaaggggagcctggca
gatgtcgtggacaccctgaagcaaaggaaaatggaagagctcatcaaaaatgagccagaa
gaaactcccagtattgaaaagctactatcaaaggactggaaagacaagcttcttgccatg
ggatcagggaactttggagaaataaaagggactccagaaagcctcgctgagaaggaaagg
cagctcatgggtatgatcaatcagctgaccagtttgagggaacagctgctagcagctcac
gatgaacagaagaagctggctgcatctcagatcgagaaacaacgccagcaaatggagctg
gctaagcagcagcaggaacagattgcaagacaacagcagcagcttctgcagcagcaacac
aaaattaaccttcttcagcaacagatccagcaggtccagggtcagctgcctccattaatg
attcccgtattccctccagaccagcgaaccctagcagcagctgcacagcaaggattcctc
cttcctcctggcttcagctacaaggcgggatgcagtgacccctaccccgttcagctgatc
ccaactaccatggcagctgctgccgcagcaacaccgggcttaggcccactccaactgcag
cagttgtatgctgcccaacttgctgcgatgcaagtgtctccgggaggcaagattcctggc
attccccaggggaaccttggtgctgccgtgtcccctaccagcatccacacagacaagagc
acaaacagccctcctcccaagaacaaggatgaagtggcccagcctctgaatctttcagcc
aagcccaagacatctgatggcaaatctcccacatcacccacctctcctcacatgccagct
ctgagaataaacagtggggccagttcactaaagtcctccgtgccagcaacattagcgagt
ccttcggccagagccaacacaataggttatttaaacgaccacgatgctgtcaccaaggca
atccaggaggcccggcagatgaaggagcagctacggagggagcagcaggtgctggatggg
aaggtggccgtggtgaacagcctgggtctcaataactgcaggacagaaaaagacaaaaca
acactggagaccctgactcagcagctggcagtaaaacagagtgaagatgggaagttcagc
cacgcaatgatggatttcaacatgagtggagattctgacggaagtgcgggagtttcggag
tctcggatttaccgcgagtcgcgagggcgtggcagcaatgagccgcacatcaagcgcccc
atgaacgccttcatggtgtgggctaaggacgagcgcaggaagatccttcaggccttccct
gacatgcacaactccaacatcagcaagatactaggatctcgctggaaagctatgacaaac
ctagagaagcagccatactatgaggagcaggcccggctcagcaagcagcacctggagaaa
tacccagactacaagtacaagcccaggccaaagcgtacctgcctcgtggatggcaagaaa
ttacgcatcggcgagtacaaggccatcatgcgcaaccgacgccaggagatgaggcagtat
ttcaatgttgggcaacaggcccagctgcccatggccacggcgggcgtggtgtacccagga
gccatcgccatggcgggaatgccctccccacacctgccctcggagcactcgagcgtgtcc
agcagccccgagcccagcatgcccgtcatccagagcacttacggggtcaagggcgaggag
ccgcacatcaaggaggagatgcagcccgacgacgccaacggggagatctacgacgagtac
gacgaggaggaggacgaccccgatgcagactatggcagtgacagtgaaaaccacattgcg
gggcaggccaactga
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