Lonchura striata (white-rumped munia): 110483506
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Entry
110483506 CDS
T05897
Symbol
LSM8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03018
RNA degradation
lsr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110483506 (LSM8)
09123 Folding, sorting and degradation
03018 RNA degradation
110483506 (LSM8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsr03019
]
110483506 (LSM8)
03041 Spliceosome [BR:
lsr03041
]
110483506 (LSM8)
Messenger RNA biogenesis [BR:
lsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110483506 (LSM8)
mRNA degradation factors
5'-3' decay
Lsm complex
110483506 (LSM8)
Spliceosome [BR:
lsr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
110483506 (LSM8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
110483506
NCBI-ProteinID:
XP_021409146
UniProt:
A0A218UZJ1
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Position
1A:40439244..40443301
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AA seq
96 aa
AA seq
DB search
MTSALETYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVVH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccgcgctggagacctacatcaaccgtactgttgcagtaattacttctgatgga
agaatgattgtgggaacactcaaaggttttgatcagaccataaacttgattttggatgaa
agccatgaacgagtgttcagttcttcacaaggagttgagcaagtagtgctaggcttatac
attgtaagaggtgataatgttgctgtgattggtgaaattgatgaagagacagattctgct
cttgacttggggaatattcgagctgaacctttaaactcagttgtgcactga
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