Lonchura striata (white-rumped munia): 110483587
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Entry
110483587 CDS
T05897
Symbol
COL9A3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr04510
Focal adhesion
lsr04512
ECM-receptor interaction
lsr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110483587 (COL9A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110483587 (COL9A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
110483587 (COL9A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lsr00535
]
110483587 (COL9A3)
Proteoglycans [BR:
lsr00535
]
Extracellular matrix (ECM) proteoglycans
Others
110483587 (COL9A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
110483587
NCBI-ProteinID:
XP_031362432
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Position
20:complement(3986927..4015271)
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AA seq
635 aa
AA seq
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MRLSQGEPGPPGLPGPPGPKGAPGKPGAAGEAGLPGLPGVDGLTGADGPPGPNGPPGDRG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NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgagccagggagagccaggccctcctggtttgccaggcccaccagggccaaaa
ggtgcaccagggaagcctggagctgcaggtgaagctggattgcctggtctgcctggagtg
gatggtttaacaggagctgatggcccacctggcccaaatgggcctccaggagaccgtggt
gcattaggacctgctgggccacctggaccagctggcaaaggactaccaggacctccaggg
cctccaggacccagtgggctcccagggggacatggatttcggggcccttctggacctttt
ggtctgccaggattcccagggcctcctggaccacctgggcctcctggtctcccaggggcc
cttcctgatggcggtggggaccttcagtgcccagctctgtgcccaccaggtcccccaggc
cccccaggaatgccaggcttcaagggacacactggtcacaaaggggagcctggtgaagta
ggaaaacaaggagagaagggtaaccctggccctcccggccctccagggattcctggcagt
gttggcctgcagggcccaagaggactaagaggcctccctggtccaatgggtccagctggc
gacagaggtgacattggattcagaggcccacctggaatcccaggacccccagggaaagtt
ggagaccaagggagcaaaggacctcagggattccgggggcccaaaggtgacactggtaaa
cctggaccaaaaggaaacccaggggctcgtgggctcataggagaacctggaatgcctggc
aaggatgggcgggatggagctcctggactcgatggtgagaagggtgatgcagctcccatg
ggtgctcctggagagaaggggccaaatggacttcctggtctgcctggaagagcaggtatt
aaaggctcaaagggtgaaccaggcagccctggagagacaggagaggcaggtccctctgga
gagccaggcatccctggcgatgttggcattcctggtgagagaggcctgccaggacccaga
ggagcaactggaccactgggcctccaaggccccgtaggagcccgtggtgtccgaggtttc
caggggcccaaaggtgccagtggggagcccggccttcctggcccgactgggatccgtgga
gaaacaggagacaggggtcctcttggtgttcctggtcccaaggggaaccagggcattgct
ggagcagatggcctcccgggtgacaaaggagagctgggtccctttggaccccctggccaa
aaaggagagccaggaaaaagaggagaacttggtccaaagggtgtgcaaggacctaatggg
acagctggagcaccagggatcccaggacatccaggacccatgggtcaccagggggagagg
ggtgtccctggcatcacaggaaaacctggacctcctggcaaagaggccagtgaacaacat
atcagagaactctgtggggaaatgataaatgagcaaattgcacagttggctgctaacctg
aggaagcccttggctcctggaatgccaggacggcctggcccagccgggcccccaggccct
cctggaaccacggggagtgttgggcatcctggtcctcgtgggccccctggatacagaggg
ccaacaggagagcttggtgatcctggacccagaggtgacactggtgaaaagggagacaaa
ggacctgttggccaaggtatcgatgggcctgatggtgaccaaggactgcagggactacct
ggtgtgcctgggattactaaaaacggccgtgatggtgctcagggtgaacccgggctgcca
ggggatcctgggactcctgggactactggggctcagggaactccaggaatatgtgacacg
tcggcttgcatgggagctgttgcagcatcaacttccaaaaaatcataa
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