Lonchura striata (white-rumped munia): 110483659
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Entry
110483659 CDS
T05897
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr04382
Cornified envelope formation
lsr04510
Focal adhesion
lsr04512
ECM-receptor interaction
lsr04518
Integrin signaling
lsr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110483659 (COL4A4)
04518 Integrin signaling
110483659 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110483659 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
110483659 (COL4A4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
110483659 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lsr04147
]
110483659 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
lsr00536
]
110483659 (COL4A4)
Exosome [BR:
lsr04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
110483659 (COL4A4)
Glycosaminoglycan binding proteins [BR:
lsr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110483659 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
110483659
NCBI-ProteinID:
XP_031361509
LinkDB
All DBs
Position
9:16115994..16182982
Genome browser
AA seq
1681 aa
AA seq
DB search
MALTKDSFERIKWLITAAWWLLIVFSTQGIDGGGYAYIDPCGGQDCSVCRCFPEKGSRGQ
PGELGPQGPIGSLGSTGPVGLQGEKGQRGENGKPGPAGEKGDKGPTGVPGFPGLDGVPGL
PGMEGPRGKPGLDGCNGSRGDPGFPGENGYMGPRGPYGIPGQKGEKGNSVYILHFGKGLP
GERGDPGPPGMPGPRGSRGTTGPSGYPGHPGLPGIPGYPGLPGEQGNPGIGVDGQKGEPG
DIGLPGPPGSPLLVGPPGAQLFKGQKGQKGLPGVTGYRGPRGPKGIPGRGEKGEKGLPGL
PGLRGHPGSYGPAGFPGMKGETGFAGFPGQPGYPGIQGDPGEKGPPGPPGAVGTPLLPIK
GPRGDPGFPGPVGEMGSVGPIGPSGLLGRPGYDGTSLPGLPGVSGAPGPQGFQGDPGLPG
TGELIPGRPGFPGPPGLPGQPGRQGLPGLPSVICTDRGIPGEPGPKGQIGLPGRKGVKGQ
KGSQGLCSCSAGPPGPRGVQGPPGTQGRKGQMGYPGGHGEKGDPGLSGAVGSPGLPGTPG
SAGQLGEKGEKGDPGRVRIKGLKGERGATGLPGLPGQRGLDGRDGELGLPGEKGAEGDSG
VAILGDKGFPGLPGPPGVKGQMGLPGLGLPGSPGARGSPGDFGDMGNVGPPGPKGQKGET
VCITSPYPGNPGPPGFKGAQGQKGLKGLPGHPGPNGFDGPKGQRGRPGAGIPGPEGFRGT
AGDPGDEGERGYTIDGKNGLPGPPGTDGQKGLPGDTTYGPPGIPGNRGLPGPPGAQGARG
NPGIPGLQGQPGTPGFPGAKGFRGPEGDVGAPGCPGFPGSPCVPGLPGPPGLRGVMGLPG
PQGLPGFKGQRGDRGLAGPPGIKGLKGTLGSRGPPGPPGSRGPPGLPGNKGPIGFPGETG
SKGIQGPQGFPGLPGIQGPMGIFGVKGEEGKMGLPGPSGECGDMGIKGERGPPGDSGCVT
LRLEKGQMGDPGFPGEHGLRGERGEKGNTGFRGTRGFPGKNGVPGLPGDQGDTGVMGFPG
SRGLPGPKGLQGITGFQGEPGDQGDAGLPGSPGYPGLTGSKGCKGKRGDPTPLLGPHGQK
GSMGDPGLPGLCGFPGEKGLPGIQGQPGRPGSKGDPGYPGLPGLPGATGPQGLPGEPGEK
GKPGILGPPGLQGLPGSQGRKGLPGLPGLDGLDGLKGQKGSPGAPGQSETGPPGYSGEIG
PKGDRGEPGWPGISIPGPPGERGFPGFPGKRGPVGPTGPMGRSPDSASPGPPGDQGLPGL
DGIRGDPGNPGPPGETIFVRGDPGDSGIRGAPGNPGPRGQQGARGPPGSQGREGPKGPMG
VHGPQGPPGALGQPGDQGFPGRPGPRGPTGFIGDPGEPGKVDDSCPTIPGPPGEAGQRGE
DGSAGLPGPIGQPGPQGIKGEEGSYGLPGQDGLPGAPGPPGDQGSRGEQGYAGPQGPPGQ
TGVPGQPGPQIRSTSGFLLVLHSQSDREPLCPQGMPKLWTGYSLLYLEGQERAHNQDLGL
AGSCLPVFSTMPFAYCNINQVCYYASRNDKSYWLSSAAPLPTAPLAEEEIQPYISRCAVC
QAPAQAVALHSQDQSIPPCPPNWRSLWIGYSFLMHTGSGDQGGGQSLMSPGSCLEDFRSA
PFIECQGQRGTCQFFANEYSFWLTTVMPELQFASAPLSGTLKEGQEQRKKISRCQVCLKH
G
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggcattaacaaaggattcatttgaacggattaagtggcttatcacagctgcctggtgg
ctgctgattgttttttcaactcaaggaattgatgggggaggatatgcatatattgatcca
tgtgggggacaggattgttcagtttgtcggtgctttccagagaaaggatcaaggggtcag
cctggtgagctgggacctcaaggtccaattgggtccttgggatctacaggaccagttggt
ctgcaaggggagaaaggacagagaggtgagaatgggaagcctgggccagctggagaaaaa
ggtgataagggcccaactggagtcccaggatttcctggtttagatggtgttcctggcctc
ccaggaatggaaggacccagaggcaagcctggtttggatggctgcaatggctcaagggga
gacccaggattcccaggagaaaatggttatatgggaccaagaggtccttatggaattcca
gggcaaaaaggagaaaaaggaaattcagtgtatattttgcattttggaaaaggacttcca
ggagagagaggtgatcctggaccccctggcatgcctggacctagggggtcaagaggtaca
acaggcccatctggatatccaggccatccaggcttgcctggtattccaggttaccctggt
ttgccaggtgaacagggaaatccagggattggagtggatgggcaaaagggggagccgggc
gacatcgggctgcctgggccgcctgggtcaccgctgttagttggacctcctggagctcag
ctgttcaaaggacaaaagggccaaaaaggattacctggggtaacaggatacagagggcca
cgtggacctaaaggcatacctgggagaggagaaaagggtgaaaaaggccttcctggattg
cctggattgcggggtcatcctggttcttatggacctgcagggtttcctggaatgaagggt
gaaacaggatttgctggatttcctggacaacctggctatccaggcatacagggggatcca
ggagaaaaagggcccccaggtcctcctggagctgttggaactccactgcttcctataaaa
ggtccacgaggagatcctggatttccaggtcctgttggtgaaatggggtcagttggacca
attggtccttcaggccttctaggaagaccaggatatgatggaacaagtcttcctggcctg
ccaggagtaagtggggcaccaggacctcaaggttttcaaggggaccctggtttgcctgga
acaggtgaattaattccaggaagaccaggatttcctggaccaccaggcctaccagggcag
ccaggaagacaaggcttacctggactacccagtgtaatctgtactgacagagggatccct
ggagaacctggaccaaaaggtcaaattggccttccaggaagaaaaggggtaaaaggacaa
aagggaagtcaaggcctctgttcatgtagtgctggtcctcctggtccccgtggtgtgcaa
ggacctccaggtacccaaggaaggaaaggacaaatgggataccctggaggacatggagaa
aagggcgacccaggcctgtctggtgccgtgggatcaccagggctccctgggactcctggt
tctgctggacagcttggggaaaaaggagagaagggtgatccaggaagagttagaataaaa
ggattaaaaggtgaaagaggagctactgggcttccaggacttccaggccaaagaggtctt
gacggcagagatggggaactaggattgccaggggaaaaaggagctgagggcgattctgga
gtagccattctgggtgataaaggattccctgggctcccgggacctcctggggtaaaaggc
cagatgggattgcctggtctggggcttcctgggtctccaggagccagaggtagccctgga
gactttggtgatatgggtaatgttgggccacctggtccaaaaggccagaaaggtgaaact
gtctgcattacatcaccatatcctggaaatccaggtcccccgggttttaaaggtgctcaa
ggacaaaagggtttaaaaggactccctggacatcctggaccaaatggctttgatgggcca
aaaggccaacgaggaaggccaggagcaggaatccctgggccagaaggctttcgaggcaca
gctggtgatcctggtgatgaaggtgaaagaggatatacaattgatggcaaaaatggcctt
ccaggcccacctggcacagatggtcagaagggtcttccaggtgacaccacatatggccct
ccaggaatcccaggcaacaggggactgccaggaccccctggtgcacagggagcaaggggt
aatccaggcattcctggacttcaaggacaacctggtaccccaggatttccaggtgccaaa
ggttttagaggcccagaaggtgatgtaggagcaccaggctgtccgggcttccctggctca
ccatgtgtcccaggcttaccaggaccacctggactcagaggtgtcatgggcctgccagga
cctcaaggtttaccaggctttaaaggtcagaggggagacaggggcctggctgggccacct
ggaatcaagggtctcaaaggcactctgggctcacgaggtcctccaggtcctccaggctca
cgcggtcccccaggacttccaggcaataaaggacccattggcttcccaggagagacagga
agcaaaggcattcaaggaccccagggattcccaggactcccaggaatacaaggcccaatg
ggaatctttggtgtaaaaggtgaagaaggaaaaatgggtctacctgggcctagtggagaa
tgcggagatatgggaataaaaggtgaaagggggcctccaggagacagtggttgtgttacc
ctccgtctggagaaaggacaaatgggggacccagggtttcctggtgagcatggattgaga
ggtgaaagaggtgaaaaaggcaatactggtttcagaggcacacgaggatttccaggaaag
aatggtgttccaggactaccaggtgaccaaggtgacactggagtgatggggtttccagga
tcacggggtttgcctggaccaaagggccttcaaggaattacaggttttcaaggagagcca
ggtgaccagggtgatgctggcttacctggaagccctggatatccaggactgactggctcc
aaaggatgtaaaggcaagagaggtgacccaactcctctgcttggtccacatggtcagaaa
gggtcaatgggagatccaggattgccaggactttgtggatttccaggggagaagggttta
ccaggtatccaaggacagcctggaagaccaggatccaagggtgaccctggatatccaggg
ctacctggattaccaggagctacaggtcctcaaggattgccaggagaacctggggaaaaa
gggaaacctggaattttgggacctccaggattgcaagggttacctggatcccaaggcaga
aaaggtcttcctggattgcctggactggatggcttggatggattaaaaggtcaaaagggt
tctccaggagctccaggtcagagtgagacagggcccccaggatactcaggagaaattgga
ccaaaaggagacagaggtgaacctggatggcctggtatttctattcctggcccccctgga
gaaaggggattcccaggatttccaggtaaaagaggacctgttggacccactggacctatg
ggaagatctcctgatagtgcctcccctggtcctccaggtgatcaaggattacctggttta
gatggcattagaggtgatcctggcaatcctggtcctcctggagagactatctttgtgcga
ggagatccgggtgacagtggcattcgaggggcaccaggtaatcctgggccacgaggacaa
cagggagccagaggccctccagggagccaaggaagagaaggcccaaagggtcctatgggg
gtccatggcccacagggtccacctggtgctttaggacaaccaggagaccaaggttttcca
ggaagacctggtcccagaggtcccacaggtttcataggtgaccctggtgaaccaggaaaa
gtagatgattcatgccctacaatcccagggcctcctggggaagcagggcagagaggagag
gatggctctgcaggattaccagggccaataggccagcctggaccccaaggcataaaaggt
gaagaaggatcatatggcctgccaggtcaagatgggttacctggggcacctggaccacca
ggtgaccaagggagccgaggagagcaaggatatgctgggccacaaggtccacctggccag
actggtgtcccaggacaaccaggcccccaaattagatctacaagtggattcttgcttgtc
cttcacagtcagtcagacagagaaccactctgcccacaggggatgccaaagttatggact
ggctatagcctgctgtacctggaaggacaagagagagcccataatcaagatcttggtctg
gcaggatcctgcctgcctgtgtttagcaccatgccatttgcctactgcaacatcaaccag
gtgtgttactacgccagccgcaatgacaagtcgtactggctgtccagcgccgcgccgctg
cccacggcgccgctggccgaggaggagatccagccctacatcagccggtgcgccgtgtgc
caggcccccgcgcaggcagtggccctgcacagccaggaccagtccattcctccctgcccc
cccaactggaggagcctttggataggatactcgtttttgatgcacactggatctggtgac
caaggtggtgggcagtccctcatgtcacccggaagctgcctggaagacttcagatcagca
ccattcatcgagtgccagggccagcggggaacatgtcagttctttgctaatgaatacagt
ttctggctgaccactgtgatgcctgagctgcagtttgcatcagcccccctgtcagggact
cttaaagaaggacaagagcagaggaaaaaaatcagtagatgccaggtatgcctgaagcat
ggctaa
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