Lonchura striata (white-rumped munia): 110483887
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Entry
110483887 CDS
T05897
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03013
Nucleocytoplasmic transport
lsr03015
mRNA surveillance pathway
lsr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110483887
09122 Translation
03013 Nucleocytoplasmic transport
110483887
03015 mRNA surveillance pathway
110483887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsr03019
]
110483887
03041 Spliceosome [BR:
lsr03041
]
110483887
Enzymes [BR:
lsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110483887
Messenger RNA biogenesis [BR:
lsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110483887
Spliceosome [BR:
lsr03041
]
Complex C
Other components
EJC/TREX
110483887
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
110483887
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
110483887
NCBI-ProteinID:
XP_021409792
LinkDB
All DBs
Position
Unknown
AA seq
413 aa
AA seq
DB search
MTLRWSFDNGTTWWGRGLRVWEGPSGYSVLAAPPPEEEGPAPLVYLIYEKGRSLSTESVS
LATISLAGDEGLGGLGGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL
EPVTGQCPVRILGCPVRIWGCPGGFGVPRRGLSTFIPQPMEIFVDDETKLTLHGLQQYYV
KLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERL
SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVGLRGGGVYRDLW
GSEGVNITFNHDMPEDSDTDLHRAKGAWFRFPPFAAALKAMDAHKRQKGRGLCRGAWFRF
PPFAAALKAMDAHKRQKGRGLRGGAVAPPPALRCCHWRRGWAGPGVGGAWCAL
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgacgctgcgctggagcttcgacaacggcaccacgtggtgggggcgtggcctgcgcgtg
tgggaggggccgagcgggtactcggtgctggcggccccgccccccgaggaggaaggcccc
gcccccctggtgtacctgatctacgagaaggggcggagcctctccaccgagagcgtctca
ttggccaccatcagcctggcgggcgatgagggtttggggggtttggggggcttcgagcac
ccctccgaagtccagcacgagtgcatcccccaggccatcctgggcatggacgtgctgtgc
caggccaagtcgggcatgggcaagacagccgtgttcgtgctggccacgctgcagcagctg
gagcccgtcaccggccagtgcccagtgaggattttggggtgcccagtgaggatttggggg
tgcccgggggggtttggggtgcccaggcgggggctcagcaccttcatcccccagcccatg
gagatcttcgtggacgacgagacgaagctgacgctgcacgggctgcagcagtactacgtc
aagctgaaggacaacgagaagaacaggaagctcttcgacctccttgacgtgctcgagttc
aaccaggtggtgatcttcgtcaagtcggtgcagcgctgcatcgccctggcgcagctgctg
gtggagcagaacttcccggccatcgccatccaccggggcatgccgcaggaggagaggctg
tcccggtaccagcagttcaaggacttccagcgccgcatcctggtggccaccaacctgttc
ggccgcgggatggacatcgagagggtcaacatcgccttcaactacgacatgcccgaggac
tcggacacctacctgcaccgggtggggctccggggggggggcgtttatagggatctttgg
gggtctgagggggtcaacatcaccttcaaccatgacatgcccgaggactcggacaccgac
ctgcaccgggcgaaaggggcgtggtttcgcttcccgcccttcgctgctgcattgaaagca
atggatgcccataaaaggcaaaaggggcgtggtttatgccggggggcgtggtttcgcttc
ccgcccttcgctgctgcattgaaagcaatggatgcccataaaaggcaaaaggggcgtggt
ttgcgcggaggcgccgtggctccgccccccgcgctccgctgctgccattggcgcaggggg
tgggcggggcccggggtgggcggggcctggtgcgcgctataa
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