Lonchura striata (white-rumped munia): 110484210
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Entry
110484210 CDS
T05897
Symbol
VCP
Name
(RefSeq) transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr04137
Mitophagy - animal
lsr04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
110484210 (VCP)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
110484210 (VCP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsr03019
]
110484210 (VCP)
03009 Ribosome biogenesis [BR:
lsr03009
]
110484210 (VCP)
04131 Membrane trafficking [BR:
lsr04131
]
110484210 (VCP)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lsr04147
]
110484210 (VCP)
Messenger RNA biogenesis [BR:
lsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
110484210 (VCP)
Ribosome biogenesis [BR:
lsr03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
110484210 (VCP)
Membrane trafficking [BR:
lsr04131
]
SNARE
SNARE associated proteins
Others
110484210 (VCP)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
110484210 (VCP)
Exosome [BR:
lsr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
110484210 (VCP)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
AAA_22
TIP49
AAA_14
NPHP3_N
RNA_helicase
Vps4_C
AAA_28
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
IstB_IS21
ATPase_2
AAA_18
AAA_7
ATPase
DUF815
ABC_tran
AAA_24
TsaE
NB-ARC
ResIII
Viral_helicase1
NACHT
Sigma54_activat
SLFN-g3_helicase
KAP_NTPase
Zot
DUF3944
Motif
Other DBs
NCBI-GeneID:
110484210
NCBI-ProteinID:
XP_021410369
LinkDB
All DBs
Position
Z:complement(34136436..34159105)
Genome browser
AA seq
806 aa
AA seq
DB search
MASGSDSKADDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQAKMDELQLFRGDTVLLK
GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV
INQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN
LRKSPVAKDVDLDFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAM
EVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGNQGG
AGPSQGTGGGSGGNVYSEDNDDDLYG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgggatccgactctaaagccgatgacttatcgactgctattctgaagcagaag
aacaggcccaatcggttaattgttgatgaagctatcaatgaagacaacagtgttgtgtca
ctgtcccaggcaaagatggatgaactgcagctgttcagaggagacactgtcctgctaaaa
ggaaagaagaggagagaagcagtctgcattgttctgtcagatgatacctgctcagatgag
aagattcgcatgaatagggttgttcgtaacaacctgagagtgcgcctgggtgatgtgatc
agcatccagccttgcccagatgtgaaatatggcaaacgtatccacgtgctgccaattgat
gacacagtagaagggatcacagggaatctgtttgaggtctatctgaagccatacttcttg
gaggcttacagacccatcaggaaaggtgacatcttcttggtgcgtggagggatgcgtgca
gtggagttcaaagtggtggagacagatccaagcccgtactgcatagtggctccagacaca
gtgatccattgtgagggagagcccatcaaacgggaggatgaagaggagtcgctgaatgag
gtgggctatgatgacattggtggctgccggaagcagctggctcaaatcaaagaaatggtg
gaacttcccctccgacaccctgctctcttcaaggccataggggtgaagcctccacgtggg
atcctgctgtatggtcctcctggcactggtaaaacactgattgcccgagcagtggccaat
gaaacgggggcattcttcttcctgatcaatggtcctgagatcatgagcaagctagctggt
gagtctgagagcaacctgaggaaagcctttgaagaagcagagaagaatgctcctgccatc
atcttcattgatgaattggatgccattgctcctaagagagagaagacacatggggaggtg
gagcgtcgcatcgtgtctcagctgctgaccctcatggacggattgaagcagagggcacat
gtgatcgtgatggcagccaccaacagacccaacagcatcgacccagcgctccggcgattt
ggtcgttttgacagagaggtagatattggtatccctgatgccactgggcgcctggagatc
ctgcagattcacacaaaaaacatgaaactggctgatgatgtggatctggagcaggtggca
aacgagacccatggccatgttggtgctgacttggctgctctttgctcagaagctgctctt
caggcgatcagaaagaagatggatctcatagacctggaagatgaaaccatcgatgctgaa
gtgatgaactctctggcagtgaccatggatgacttcaggtgggctctgagccagagcaac
ccttctgctcttcgggagactgtggtggaggtgccacaagttacctgggaagatattggt
ggcttagaggatgtcaagagggaactccaggagcttgtacagtatcctgtggagcaccca
gacaagttcctcaaatttggcatgaccccatcaaaaggggttctcttctatgggccacct
ggctgtggtaagacattgctggccaaagccattgccaatgaatgccaggcaaacttcatt
tccatcaaggggccagaattgctcaccatgtggtttggtgagtctgaagccaacgtacgc
gagatctttgacaaggctcgccaagcagccccatgtgtgctcttctttgatgagctggac
tcgatcgccaaggcccgaggtgggaatatcggcgatggtggtggtgctgcagatcgtgtc
atcaaccagatcctgactgagatggatggcatgtccaccaagaaaaatgtcttcatcatc
ggtgccaccaacaggccagacatcattgacccagccatcctgcgccctggccgcctggat
cagctcatctacatccccctgcctgatgagaagtccagggttgcaatccttaaagccaat
ctgaggaaatcaccagttgcaaaggatgttgacctggatttcctggcaaagatgaccaat
ggcttctcaggggctgacctgacagaaatttgccagcgtgcctgcaaactggccatccgc
gaatccattgagagtgagatcagacgagagcgtgagaggcaaaccaacccttctgccatg
gaggtggaggaggatgatccagttcctgagatccgcagagatcactttgaggaggccatg
cgctttgctcgccgctctgtcagtgacaacgacatcaggaaatatgagatgtttgcacag
accctacagcagagccgtggctttggcagtttcaggttcccatcaggcaaccagggcggc
gctggtccgagccaaggcacaggcggtggcagcgggggcaacgtgtacagcgaagacaat
gacgacgatctctacggttaa
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