Lonchura striata (white-rumped munia): 110484416
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Entry
110484416 CDS
T05897
Symbol
CHD9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
lsr
Lonchura striata (white-rumped munia)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lsr03036
]
110484416 (CHD9)
Chromosome and associated proteins [BR:
lsr03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
110484416 (CHD9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
HTH_CHD1_Hrp3
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
110484416
NCBI-ProteinID:
XP_021410700
LinkDB
All DBs
Position
11:complement(11176304..11262399)
Genome browser
AA seq
2889 aa
AA seq
DB search
MTDPMMDFFDDANLFSETLEGLSDDAFVQPGPVSLVDELNLGAEFEPLHIDSLNHVQDAQ
NQQKMSEFDQLNQYDSLKLHSVNQSFNSSADNVLSPHSQFNCSPVHPQNQSNGMFPDVAD
GSPMWGHQTATTVSNQNGSPFHQGHSQSMQQNKSFVAHHDFALFQANEPQHQCASLRPQQ
SRNNTGQDALSQPKDFMEVNVSTSLRVSVNHPPSVSNPSTSQQPLSVQQFSQTASTSIHF
CGNQEGNFDGQSPTITPCSVSNSQQFSSPYSYSNNHISPTSLLQPTTALSTSQQTHSISD
FTGSDAFTSQTGTKQEATEHMLNPNTALNSSTFQMLHSAHPQGNFSSSKLSPVNMNFPAS
TGSASQISHFTDSIESNGFTSLDDNLLHQVETHNEPFTGLDPDDLLQEDLLPQFDDSAFV
QDSTSHVLEHDLEHHITPQQVTSSSELVRPPSQTQIHPWHSSVSNQHLQGRSRATLQGQP
PSKKTDGSGSYTKLQNTQVRGMSEKKQKKKTDSESKQEKANRIISEAIAKAKERGERNIP
RVMSPENFPSVSAEGKEEKKGRKVKSKPKDKETKKPKTGSSSKIKEKTKIGKLIITLGKK
QKRKNESSDELSDAKQTPQRPLKDEDSQKRRSNRQVKRKKYSEEGEGKQSEEEAAKVSVK
IKKNSAPLPAEQPLQLFVENPSEEDAAIVDKILSSRVIKKEISAGMTVDTEEFFVKYKNY
SYLHCEWATEQQLLKDKRIQQKIKRFKVRKAQRAHFFADMEEEPFNPDYVEVDRVLEVSL
CEDKDTGEPVIYYLVKWCSLPYEDSTWELKEDVDQAKIEEFEQLQASRPDSRRLDRPPPN
SWKKIEQSREYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEIL
LTGIRGPFLIIAPLSTITNWEREFRTWTDLNVVVYHGSMISRQMIQQYEMYFRDSQGRIV
RGTYRFQAIITTFEMILGGCPELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVL
LTGTPLQNTVEELFSLLHFLEPLRFPAESTFMQEFGDLKTEEQVQKLQAILKPMMLRRLK
EDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFAFLSKGAGQANVPNLVNTMMELRKC
CNHPYLIKGAEEKILGEFKETYNPSAPDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLI
FSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGL
GINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLK
LGLDKAVLQSMSGRENSVGGIQQLSKKEIEDLLRRGAYGAIMDEEDEGSKFCEEDIDQIL
QRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIDAISGRNSL
VIDTPRIRKQTRPFSATKDELAELSEVESEGDEKPKLRRPCDRSNGYGRTECFRVEKNLL
VYGWGRWREILSHGRFKRQLNEQDVEIICRALLAYCLVHYRGDEKIKSFIWDLITPTEDG
QTRELQNHLGLSAPVPRGRKGKKVKTQASTFDIHKAEWLRKYNPEHLLQDEGYKKHIKHH
CNKVLLRVRMLYYLKQEVIGNEFQKVFDGTDASEIDVWVPEPDHSEVPAEWWDADADKSL
LIGVFKHGYEKYNTIRADPALCFLERVGKPDEKAVAAEQRANDYMDGDVEDPEYKPAPAL
FKDDIEDDVSSPGDLVIADGDGQMMEGDKIYWPTQSALTTRLRRLITAYQRTSKNRQALQ
IQPTFPVQTSMMQLQYEEAALNPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDPERGR
FDWTKFRAMARLHKKTDDSLEKYLYAFMSMCRRVCRLPSKEELVDPNLFIQPITEERASR
TLYRIELLRKVREQALRHPQLFERLKLCQPNPDLPVWWECGTHDRDLLIGAAKHGVSRTD
YHILRDPELSFMSAQRNYNQNKVALSRTSTPLLHQYQMALSASPLTPQSRLSDAKVNAFE
DTKAKNENMKEDPQSSEEESMSTEETQTILKSEPLSPKNGTPMQITDHRPNVKAETDRRM
VAARTEPLTPNPASKKQRVSKRGSDSSSDSDSDSDRSSCSSRSSSSSSSSSSSCSHSRSG
SSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSDEEEAQKRAEGTPHIKAYDEESVA
SLSTTQDETQDSFQMNNGTPNSGYLLQGGYMLAASYWPKDRVMINRLDSICQTVLKGKWP
SARRSYDSATVASFYTTKLLDSSGAAAEYSEPSAPTPPLAAVKEEYDQSPQLSKVKKHVR
EKEFTVKINDEGGLKLTFQKQGLSQKRPFESEEGALGQQQYLARLRELQNASETSLVNFP
KSLPKSGTSSHLTASANGVIVDSQPVVKKRRGRRKNVEGVDVLFMNRNKQPNHVNPGINS
CQVAAGINPALTYTQSQGMLDAESPVPVINLKDGTRLAGDDAPKRKDLERWLKEHPGYVE
DSGACIPRMQLHDGRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFAPPLK
DLCRFLKENPEYGVAPEWGEVVKQSGFLPEGMFDRILTGPVVREEVSRRGRRPKSEMAKA
TAAAAASAAGVSVNPLLANGLLPGVELPGLQALQQNLQNLQSLQVTAGLMGMPAGLAAAG
EAKNVAAMFPMLLSGMAGLPNLLGMGGLLTKSTESVSEEKKGNDSKETDAKKERTEDQNM
DTGGENSVSSSPSTSSAAANPLSLNPLLLSNILYPGMLLTPGLNLHIPALSQSNIFDVQN
NESNDTGSAKPTEEKEENSRVRDQEDKGGTEPSSHNENSTDEGSEKADASSGSDSTSSSS
EDSDSSDED
NT seq
8670 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcctatgatggatttttttgatgatgccaatctttttagtgagaccttagaa
ggtttgtcagatgatgcctttgttcaacctggacctgtttcacttgttgatgaattgaat
ttgggtgcagaatttgaacctttgcacatagactcactgaaccatgtgcaagatgctcaa
aatcaacaaaagatgagtgagtttgatcagctgaatcagtatgattcactgaagcttcac
tcagtaaatcagtcttttaatagctcagctgacaatgtcttatccccacactctcaattc
aattgttcaccagttcatccgcaaaaccagtccaatgggatgtttccagatgtggctgat
ggtagtcctatgtggggtcatcaaactgccacaactgtttcaaatcaaaatgggtcccct
tttcaccaaggacattctcagtctatgcagcaaaacaaaagctttgtagcacaccatgac
tttgccttatttcaggctaatgaaccacagcatcagtgtgcctccctacggccacagcag
agcaggaacaacacagggcaggatgctctgagtcagccaaaagacttcatggaagttaac
gtgtctacttccctcagagtcagtgtcaaccacccaccttcagtttctaatccatcgact
tcacagcagcctctgtctgttcaacagttttctcaaactgcaagtacttctatacatttt
tgtgggaatcaagaaggaaattttgatggacagtccccaactattactccatgttcggtc
agtaatagtcagcaattttcatctccgtattcctactcaaataatcacatttctcctacc
agcctccttcagcctacaacagctctttctactagccagcagacacactctatctctgac
ttcactggaagcgatgcctttacatctcaaacagggaccaagcaagaagcaactgagcac
atgttgaatcctaacacagccttgaattcaagtacttttcaaatgttgcattctgcgcat
cctcagggcaactttagtagttcgaaactctctcctgtgaatatgaattttccagcttct
actggttctgcttctcagataagccatttcactgactctattgaaagcaatggttttaca
tctttagatgacaacttacttcatcaagtggagactcacaatgaaccattcacaggactt
gacccagatgacctcttgcaggaagaccttctgccacagttcgatgactctgcgtttgtt
caggatagcacaagccatgttttagagcatgacctagaacaccacataaccccacagcaa
gtgacatcgtcatccgaactcgttcggccaccgtctcaaactcagatccatccttggcat
tcttcagtttctaatcagcacctgcaaggcagaagtcgtgcaaccttacaaggacagcct
ccttccaagaaaactgatggttcaggatcctatactaagttgcagaatacccaggtgagg
ggaatgtctgaaaagaagcagaagaaaaaaacagactcggaaagtaaacaagagaaagcg
aatcgcataatatctgaagcaattgcaaaggcaaaagagagaggagagagaaacattcca
cgagtaatgagccctgaaaacttccccagtgtttcagctgaaggaaaagaggaaaagaag
ggtagaaaagttaaatccaaaccaaaggataaggagaccaaaaagccgaaaactggttcc
tcatccaaaattaaagagaaaacaaaaattggaaagctgatcatcacactgggcaaaaag
cagaaaaggaaaaacgaatcttcagatgaattgtctgatgctaagcagactccacagagg
ccactgaaagatgaagactcacagaagaggagatcaaatcgtcaagttaaaaggaaaaaa
tactctgaagaaggagaagggaaacaatcagaagaagaagcagctaaagtttctgttaaa
atcaagaagaattctgcccctttacctgctgaacagcctttgcaattatttgtggaaaat
ccaagtgaagaagatgcagcaattgtagacaaaatcttatcctccagggtaataaagaaa
gaaatatctgctgggatgacagtagacacagaagagttttttgtaaaatacaagaactac
tcatatctccactgtgagtgggccacagaacaacagcttttaaaggataaaagaatccag
cagaaaataaagcgattcaaagtaaggaaagcacaaagagctcacttttttgcagatatg
gaagaggaaccttttaatcctgactatgttgaagtagaccgggtattagaagtgtctctt
tgtgaagataaagacactggtgagcctgttatttactatttagtaaaatggtgttcgttg
ccatatgaagacagtacgtgggagctgaaagaagatgtagatcaagcaaaaatagaggaa
tttgaacaattgcaagcttccaggcctgactcaaggagattggaccgcccacctccgaac
tcctggaagaagatagaacagtccagggaatataaaaatggcaatcagctcagggaatat
caactggaaggacttaactggctcctattcaactggtacaataggcgaaattgcatttta
gcagatgagatgggccttggcaaaaccattcagtccattacattcctgtatgaaatcctc
ctgactggtataagaggccctttcctgatcatagctccactttccactataacaaactgg
gagagggaattccgcacgtggactgacctgaatgttgtggtgtaccacgggagtatgatc
agcaggcagatgattcagcagtatgagatgtacttcagggactcccagggccgtattgtt
cgaggtacctacaggttccaggccattatcacaacttttgaaatgatccttggtgggtgt
ccagaattaaatgcaattgagtggcggtgtgttattattgatgaagctcacagactgaaa
aacaagaactgcaaacttttggaaggactaaaattgatgaaccttgagcataaagtgctg
ttaacgggtaccccactgcagaacacagtagaagaattatttagcctccttcattttctg
gaaccattgcgttttcctgctgaatctacattcatgcaagagtttggagaccttaaaaca
gaggaacaggttcagaaactacaagctatcctgaaacccatgatgctcaggagattaaaa
gaagatgtagaaaaaaagctggctcctaaggaggaaaccataatagaagtagaactaact
aacattcagaagaaatattaccgagcaattttggagaaaaattttgccttcttatccaaa
ggagcaggacaagctaatgtacccaatctggttaacactatgatggaactcagaaagtgt
tgtaatcacccttatctcatcaaaggtgctgaagaaaagatccttggagagtttaaagaa
acgtataatccaagtgctcctgacttccacctgcaagcaatgatccagtctgctggtaaa
ttggttcttattgataagcttcttccaaaaatgaaagcaggaggccacaaggtccttatc
ttctctcaaatggtgcgctgccttgatatcttggaggattaccttatacataaaaggtac
ctgtacgagcggatcgacgggcgcgtgcggggcaacctgcggcaagccgccatcgaccgc
ttcagcaaacccgactcggatcgcttcgtcttcctcctctgcaccagggccgggggcctg
ggcatcaacctgactgcagcagatacctgcatcatttttgattctgactggaatccccaa
aacgacctgcaggctcaagcccgatgccacaggattggtcagaacaaagcagtgaaggtc
tacagactgatcacacgtaattcctatgagagagagatgtttgacagagcaagtctgaaa
ctgggactggataaggctgtcttgcagagtatgagtggaagagaaaacagtgttggtggt
atccaacaactctccaaaaaagaaatagaagacttgcttcgaagaggtgcctatggtgcc
attatggatgaggaggatgaaggatccaaattctgtgaggaagacattgaccagattctg
cagcgtcggactaaaaccatcacgatcgaatccgagggaagaggctccacgtttgccaag
gctagttttgttgcatctggaaacaggactgatatttcacttgatgatcccaacttctgg
caaaaatgggccaaaaaagcagaaattgatattgatgctatcagtggtagaaacagcctt
gtcattgataccccaagaataaggaaacaaactcggcccttcagtgccacaaaggatgag
ctggcagagttgtctgaggtggagagtgagggtgatgaaaaaccaaagctccgccggccg
tgtgaccgctccaatggctatggaaggacagagtgcttccgtgtggagaagaacttgctg
gtctatgggtggggacgatggagagagattctgtcccatggtcgcttcaagaggcagctg
aatgagcaggatgtggagataatttgccgagccctgttagcctactgtcttgttcactac
agaggggatgagaaaataaagagttttatatgggatctcatcaccccaacagaggatggg
caaacacgagagttacagaaccacctcggcttatcagcccctgtgcctagaggaagaaaa
ggaaaaaaggtgaagacccaggctagcacttttgatatacacaaagcagaatggcttcga
aaatacaatccagagcatctgttgcaagatgaaggatacaaaaagcacataaaacaccat
tgcaacaaagtcttacttcgagtaagaatgctatactacttaaagcaagaagtcattggt
aatgaattccaaaaggtctttgatggaactgatgccagtgaaattgatgtttgggttcct
gagccagaccactctgaagttcctgctgagtggtgggatgcagatgcagataaatctctt
ctaattggagtttttaaacatggttatgaaaaatacaacactatcagagcagacccagct
ctttgcttcttggaaagggttggaaaaccagatgagaaagcagttgctgctgaacagaga
gcaaatgattatatggatggggatgtggaagatccagaatacaaaccagcaccagcactg
tttaaagatgacatagaggatgatgtttcatccccaggtgatctcgtaatagcagatgga
gatggacaaatgatggaaggggacaaaatctattggcccactcagtctgccttaacaacg
cgtctacgccgcctgatcaccgcttatcaacgaacgagtaaaaacaggcaggccctgcag
atccagccaacattcccagtacaaaccagtatgatgcagctgcaatatgaagaagctgca
ctaaatccaaagatggctgctaagattgaaagacagcaaagatggacaagaagagaagaa
gctgatttttaccgagttgtgtccacatttggagtggtttttgaccctgaaaggggacgg
tttgactggaccaagtttcgagcgatggctcggctgcacaagaaaactgatgacagcttg
gagaagtacctgtatgcatttatgtcaatgtgcaggagggtctgtcgcctcccctctaaa
gaagagctcgtggacccaaacctttttatccagcccatcacagaggaacgtgcttcccgg
actttgtaccgcatcgagctgctgcgcaaagtgcgggaacaggccctcaggcacccccag
ctgtttgagcggctgaagctgtgccagccaaacccagacctacctgtctggtgggaatgt
gggactcacgacagggatctgcttattggagctgctaaacacggagttagcaggacagat
tatcatattcttcgtgatcctgaactctcatttatgtctgcccagaggaactataatcaa
aacaaagtggctctctcaaggacttctactccgctcttgcaccagtaccagatggcatta
tctgcttctcctcttacacctcagtcaagactgtcagatgctaaagtgaatgcctttgag
gacacaaaagctaaaaatgaaaatatgaaagaggatcctcagtcttctgaagaggaatct
atgtctacagaggagacacagacaatactgaaatctgaacctttgagtcccaaaaatggc
accccaatgcaaattacagaccacagacctaacgtgaaggctgagacagacaggcgcatg
gtggcagcaaggacagagcctctaactccaaacccagcttccaaaaaacagagagtcagc
aaaagggggtctgactctagctctgactcagactctgactcagatagatcatcctgttct
tccaggtcatcatcttcatcatcttcgtcttcctcatcttgttcccactctcgatctggg
tctagctcttcatcatcttcatcttgttcttcagcatcttcatcgtcctcctcatcatcc
tcatcatcatcgtcatcatcatcatcatcgtctgaagagagtgatagtgatgaagaggag
gcacaaaaacgtgcagaaggaactccacatataaaagcctatgatgaagagagtgtggcc
tctctgagcaccacacaagatgagacacaagacagtttccagatgaacaatgggacacca
aattctggttacctgctacaaggtggatatatgttggctgcatcctactggccaaaggat
cgagtcatgattaaccgactggacagcatttgtcagacagtgctgaagggtaaatggcct
tcagcccgaaggagctacgacagcgccacggtggcttcgttctacaccaccaagctcctg
gacagctcaggggcagctgcagagtacagcgagcccagtgcacccacaccccctctggca
gctgtaaaagaagaatatgaccaatcaccccagctgtcaaaggtgaagaagcatgtacga
gaaaaggagtttacagtgaaaatcaatgacgaaggtggtttgaaattgacttttcagaag
cagggactgtctcagaaaaggccgtttgaaagcgaggagggtgcattgggtcagcagcaa
tatctggctcggctacgtgaactccagaatgcttcagaaaccagccttgtcaacttcccg
aaatcacttcccaaatcaggtacttccagtcacttaacagccagtgccaatggagtcata
gttgacagtcagcctgtagtcaaaaagagacgaggaagaaggaagaatgtggagggggtt
gatgtcctctttatgaatagaaataaacagcctaaccatgttaatccaggtattaactcc
tgccaggttgctgcaggaataaacccagcactcacttacacacagtcccaaggcatgctt
gatgcagagagcccagttcctgttattaacttaaaagatggaacaaggcttgcaggtgat
gatgcccctaaaagaaaagatttagaaagatggcttaaagaacatcctggatatgttgaa
gattcaggagcttgtattcctaggatgcagctgcatgatgggaggcccaaacaaaaaaga
caccgttgtcgaaaccccaataaactggatgttaacagcttaactggcgaagaacgtgtt
cagctcataaatagaagaaatgcaagaaaggttgggggtgcatttgctccccctctgaag
gatttgtgcaggttcttgaaagaaaaccctgagtatggagtggctcctgagtggggagaa
gtagtaaaacagtctggcttcctccccgaaggaatgtttgaccgcatcctgacgggcccg
gtggtgcgggaggaggtgagccggcgcggcaggcgccccaagagcgagatggccaaggcc
acggcggctgcggccgcctcggccgccggcgtgtccgtcaaccccctgctggccaacggg
ctgctgccgggagtggagctgcccggcctccaggccctgcagcagaacctgcagaacctg
cagtcgctgcaggtgacggccggactgatgggaatgccggccggcctcgctgccgccgga
gaggccaagaacgtggctgccatgttccccatgctgctctcggggatggccggattacca
aacctgctgggcatgggaggactcctgacaaagtccacagaatccgtgtcggaggagaaa
aagggaaacgattcaaaggagacagatgcaaagaaggaaaggacagaagaccaaaacatg
gatactggtggtgaaaactctgtttcaagttctccttcaacatcctctgcagctgccaat
cctctctctcttaaccctttacttttgtccaacatactttacccagggatgcttctcact
ccaggccttaatcttcatatcccagctttgtctcagtctaatatttttgatgtacagaac
aatgaaagcaatgacacgggctcagccaagcccacagaagaaaaggaggaaaattctagg
gttagagatcaggaagacaaagggggaacagagccaagctctcacaatgaaaacagcaca
gatgagggttcagagaaagcagatgcttcatctggatctgacagtacatcgtcttcatct
gaggattcggattcaagcgatgaagactga
DBGET
integrated database retrieval system
