Lonchura striata (white-rumped munia): 110484613
Help
Entry
110484613 CDS
T05897
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110484613 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsr03041
]
110484613 (SF3B1)
03036 Chromosome and associated proteins [BR:
lsr03036
]
110484613 (SF3B1)
Spliceosome [BR:
lsr03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
110484613 (SF3B1)
Complex B
110484613 (SF3B1)
Complex C
U2 SnRNP specific factors
110484613 (SF3B1)
Chromosome and associated proteins [BR:
lsr03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
110484613 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
110484613
NCBI-ProteinID:
XP_021411108
UniProt:
A0A218UXK2
LinkDB
All DBs
Position
7:complement(10129616..10153087)
Genome browser
AA seq
1301 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKPALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYPSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatatcgaagcacaaattcgagaaattcaagga
aaaaagcctgctcttgatgaagcacaaggagtaggccttgattccacaggatattatgat
caagaaatttatggtggcagtgacagcagatttgctggatatgtcacttctattgcagct
actgaattggaagatgatgatgatgactacccttccacaagtctgcttggccagaagaag
ccaggataccatgctccagtggcattgcttaatgacataccacaatctactgaacagtat
gatccttttgcagagcaccgtcctcaaaagattgcagatcgggaagatgagtacaaaaag
cacaggcggatgatgataatttcccctgagcgtcttgatccttttgcagatggagggaag
acaccagaccctaaaatgaatgccagaacatacatggatgttatgcgtgaacagcattta
acaaaagaagagagggaaattaggcaacaactagctgaaaaagctaaagctggagaactt
aaagtcgtcaatggagctgcttctcagccaccttcaaaacgcaaacggcgttgggatcag
acagctgatcagactcctggtgctacacctaagaaattgtccagttgggatcaagcagag
actcctggacacacgccatctctgcgatgggatgaaactccaggccgtgcaaagggtagc
gaaactccaggtgccaccccaggctcaaaaatctgggatccaactcccagtcatacacca
gcaggagctgcgacgcccggccgggacacgcctggtcacgcaacaccaggccatggaggt
gccacttccagtgcacggaaaaatcgatgggatgaaacccccaaaacagaaagagatact
ccaggccatggcagtggctgggctgagacacctcgtacagatagaggtggtgactccatt
ggtgagacaccaaccccaggagcaagcaaaaggaagtcacgctgggatgaaacacctgcg
agccagatgggtggcagcactcctgttctgacacctggcaaaacacccattggtacacca
gctatgaacatggcaacccctacaccaggtcacatcatgagcatgacccctgaacagctg
caggcttggcgctgggagagggaaattgatgagagaaacagaccactttctgacgaggaa
ttggatgctatgtttcctgaaggatataaggttctcccacccccagctggttacgtgccc
atccgtactcctgctcggaagctcacagcgactccgacacccctggggggtatgacagga
ttccacatgcagacagaggaccgcactatgaagagtgttaatgaccagccatctggcaac
ctgccattcctgaaaccagatgatatccagtacttcgacaagctgctggttgatgttgat
gaatcgactctgagtcccgaggaacagaaagagagaaaaataatgaaattacttctgaaa
ataaagaatggcacacctcccatgcgaaaggctgcgttgcggcaaattacggataaagct
cgggaatttggagcagggccgctgttcaatcagattctgcctctgctgatgtcaccaaca
cttgaagatcaggagcgtcacttgcttgtcaaagtcatcgacagaattctttacaaactg
gatgacttggtccgaccatacgtacacaagatccttgtcgtcattgaaccactgctgatt
gatgaagactactatgctagagtggaaggcagagaaattatttctaacttggctaaggct
gcgggtttggcaacaatgatctccacaatgcgacctgatattgataacatggatgaatat
gtcagaaatacaacagctcgagcctttgctgttgttgcgtctgctctgggcattccttct
ttgttacccttcctgaaagctgtctgtaaaagcaaaaaatcctggcaggccaggcacact
ggcatcaagattgtacagcagattgctattcttatgggttgtgctatcctgcctcatctc
aggagcttggttgaaattattgagcatgggctggtggatgagcagcagaaagttcgcacc
atcagtgctttggccattgctgctttggctgaggcagccactccctatggtattgagtca
tttgattctgtcctgaagcccttgtggaagggtatacgtcagcatagaggaaagggtttg
gctgcatttttgaaggcgattggttacctgattccactcatggatgccgagtatgcaaac
tactacaccagagaagtcatgctgattcttatcagagagttccagtctcctgatgaagag
atgaagaaaattgtattgaaggtggtaaagcagtgttgtggtacagatggtgttgaagca
aactacattaaaacagaaatcttgccacccttcttcaaacatttctggcagcatagaatg
gcactggacagaagaaattacagacagttggttgatacaactgtggagctggcaaataaa
gttggagcagcagaaattatttctagaatcgtggatgatctgaaagatgaggctgagcag
tacagaaagatggtcatggaaacaattgagaagataatggggaatctgggggcagcagac
atcgatcacaagctggaagagcagctcattgatggcattttgtatgccttccaggaacag
acaacagaggattctgtgatgctgaatggttttggtactgtggttaatgctctaggcaaa
agagtgaaaccctacttgccacagatctgtggtacagttttgtggcgtttgaacaacaaa
tcagccaaagtcaggcagcaggctgctgacctgatctctcgtactgctgttgtcatgaag
acttgtcaagaggaaaaactgatgggacacttgggtgttgttttgtatgagtaccttggt
gaagaatatcctgaagtactgggcagcatacttggagcgttaaaggctattgtgaatgtt
ataggtatgcacaagatgacaccaccaatcaaagacctgctgccacggttgacacctatt
ttgaagaacagacatgagaaagtgcaggaaaattgtattgatcttgttggacgtattgca
gacagaggtgcagagtatgtttctgcaagagaatggatgaggatctgctttgaactgctt
gagttattaaaagctcacaagaaagctatcagaagagccacagtgaacacttttggttat
attgcaaaagctattggacctcacgatgtattggccacactgctaaacaatttgaaagta
caggaaaggcagaacagagtatgtactacagtagcaattgctattgtggctgaaacatgc
tcacctttcacagtgctgcctgcactcatgaatgagtacagagttccagaactgaatgtc
cagaatggtgtgttaaaatctctctctttcctgtttgaatacattggagagatgggaaaa
gattacatttatgctgttacaccattgcttgaagatgctttaatggacagggatctggta
cacagacaaacagccagtgctgtggtgcagcacatgtcccttggtgtttatgggtttggc
tgtgaagattctcttaatcacttgttaaattacgtgtggcccaatgtgtttgaaacctct
cctcacgttatccaggcagttatgggggctctggagggcctcagagttgctattgggccc
tgcaggatgttacagtactgtttacagggtttgtttcaccctgccagaaaagtcagagat
gtttattggaagatctacaattcaatctacattggatcacaggatgctctgatagcacat
tatccaagaatctataatgatgaaaagaacacctatattcgttatgaacttgattacatc
ttataa
DBGET
integrated database retrieval system
