Lonchura striata (white-rumped munia): 110484774
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Entry
110484774 CDS
T05897
Symbol
RB1CC1
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
110484774 (RB1CC1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lsr01009
]
110484774 (RB1CC1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsr04131
]
110484774 (RB1CC1)
03029 Mitochondrial biogenesis [BR:
lsr03029
]
110484774 (RB1CC1)
Protein phosphatases and associated proteins [BR:
lsr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
110484774 (RB1CC1)
Membrane trafficking [BR:
lsr04131
]
Autophagy
Autophagosome formation proteins
ULK complex
110484774 (RB1CC1)
Mitochondrial biogenesis [BR:
lsr03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
110484774 (RB1CC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
Motif
Other DBs
NCBI-GeneID:
110484774
NCBI-ProteinID:
XP_021411374
UniProt:
A0A218VCF5
LinkDB
All DBs
Position
2:complement(112088228..112157455)
Genome browser
AA seq
1598 aa
AA seq
DB search
MKLYVFLVNTGTTLTFDTELAVQNVADLKHAIQTKYKIAIQHQVLVVNGGECMAPDRRVC
SYSAGTDTNPIFLFNKEMILCERPPAIPKTTFSAENEMELKVEESLMMPAVFHTVASRTQ
LAVEMYEVAKKLCSFCEGLVHDEHLQHQGWAAIMANLEDCTYSYQKLLFKFENVYSSYLQ
SIDDIKLKLTHLGSAVSIMAKIPLLECLTRHSYRECLGRLESSPEHRGAESEDTEDGKSA
ELVLYPDVSKVNSKSMLASFCKSVEHSALEGTDPENVKDDKESGQNATVQDNEMSVELKD
DDQPSFNVSLLDWINVQDRPNDVESLVRKCFDSMSRLDPRIIQPFLTECRQTIAKLDNQN
MKAIKGLEDRLYALDQMIASCSRLVNEQKELAQGFLANQKRAENLKDPSVLPDLCLSHAN
QLMIMLTNHRKLLDIKQKCTTAKQELANNLQVRLKWCCFVMLHADQDGEKLQALLRLVTE
LLERVKVVEALSTVPQMYCLAVVEVVRRKMFIKHYREWAGALIKDGKHLYEAEKAKRESF
GKLFRKSFLRNRLFRGLDSWPPSFCTRKPRRFDSELPDISLSDLQFLQSFCPSEVQPLLR
VPILCDFEPLHQHVRALHNLVKAAQSLDEMSQTITDLLNEQKASNSQASPQSATTPRMES
TTGTAIATSSRTPPSLSLQGPLCPPVCPPAPLEELSPDSIDAHTFDFETIAHPNLEQALK
QGSLDLDSLAESPESDFMSAVNEFVIEENPVSPNVISDPQSPEMMVESLYSSVINAIDSR
RMQDTSSCVKDVSAENASLSVCVEKCRVIAQDSKVHLRGIKEDLCHFRTLVQREQCDFSN
SLKCTSLEIVNTIEKVKLSLEKTLNDKHQNELQSLKSEYETKINKLLEDGEENKKKIKKL
KGDLLGLEEVLQNKNDEFAIVKNEKEAVVCLQNEKDQKLLELECQMETQNSEIKELRQSR
EIVLEDLKKLHVENNEKLQLLRAELESLEQSHLKELESNLQARHLQEFEKVLAEHKDCLD
KLKKENEHRLEQMQESHEVVMQEKQQQVEELQLKVSDLSDLRCKLEVELALKEAETDEMK
LLLEESRNQQQETLRCQIDKETESLRNEIDKLNNKIQISSDEYQVGLSELRTLLTIEKDQ
CISELVNRYEEESNLLRTELNKVTLLHQKTAEAEKRLSDQITELQSKLELEMTALEKEKT
EKMSLCEQQEKYEAIIHKLKEEKELLISNQEQDRQLLIQKLNCEKEDAVQTACKELELQR
EAAEKGLLEKILQLEMQVNRSPPAESSAESNLVAELQEKLQEEKMKFLEQLEEQEKRKNE
EMQNIRTSLTAEQQTNFNTVLAREKMKKENIINDLSDKLKVLTQQQEKDKDLIETLSEDR
ARLLDEKKKLEEEVNKLRSSNYSPSTYLAAASEVCGACAADVPTDTDRLVADFGAEGRMD
STMETSMMAVHENVHMSEEKQRIMLLERTLQLKEEENKRLNQRLMSQSMSSVSSRHSEKI
AIRDFQVGDLVLIILDERHDNYVLFTVSPTLYFLHSESLAALDLKPGECASGASRRPWVL
GKVMEKEYCQAKKAQNRFKVPLGTKFYRVKAVPWNKKV
NT seq
4797 nt
NT seq
+upstream
nt +downstream
nt
atgaagctatatgtatttttggtcaacactggaactacccttacatttgatactgaactt
gctgtacaaaatgtggctgatctgaaacatgcaattcaaacaaagtataagattgccatt
cagcaccaagtactggttgtcaatggaggagagtgtatggcaccagacagaagagtgtgt
agttacagtgctggaacagacaccaacccaatttttttattcaacaaagaaatgatcttg
tgtgaacgcccaccagctatccccaaaaccacgttttcagcagagaatgagatggaattg
aaagtagaagaatctcttatgatgcctgcagtgtttcatacagtagcatcacgaacacag
cttgcggtggaaatgtatgaggttgccaagaaactttgctccttttgtgaaggtcttgta
catgatgaacatcttcaacatcaaggctgggctgctataatggccaacttggaagattgt
acatactcttaccaaaagctgcttttcaagtttgaaaatgtgtattcaagctatttgcag
tccatagatgatatcaaattgaaacttacacacttgggttctgctgtttctattatggcc
aagataccactgctggagtgcctaacaagacatagttacagagagtgtttaggaagactg
gagtcttcacctgaacatcgaggagcagaaagcgaagacactgaggatgggaaatctgct
gaattggtgctttatcctgatgtatctaaagtgaacagtaaatcaatgttagcatcattt
tgcaagtcagttgaacattcagctttggaaggcacagatcctgaaaatgtaaaagatgat
aaggaatctggtcaaaatgctactgtccaggacaatgaaatgtcagtagaactgaaagat
gatgatcagccttccttcaatgtgtctttgttagactggataaatgttcaagatagacct
aatgatgttgaatccctggtcagaaaatgttttgattccatgagcaggcttgatccaagg
atcatccaaccctttctgacagaatgtcgccaaactatcgccaaactagataatcagaac
atgaaggctattaaaggtcttgaggatagactctatgcattggaccagatgatagcaagc
tgcagcagactggtgaatgaacaaaaagaacttgctcagggatttttggctaatcagaag
agagctgagaacttgaaagatccttcggtgctgcctgacttgtgtttgagtcatgcaaat
cagctgatgattatgttaactaatcacagaaaactgttagatattaaacagaaatgtacc
actgccaaacaggagcttgcaaataatctgcaagtcagactgaagtggtgttgttttgta
atgcttcatgctgaccaagatggagagaaactacaagcactgcttcgtcttgtaacagag
ctcctagaaagggtcaaagttgtagaggctctcagcactgttcctcagatgtactgttta
gctgttgttgaagttgtgaggagaaaaatgttcataaaacactacagggagtgggcaggt
gctttaataaaagatgggaaacatctatatgaagctgaaaaggcaaaaagggaatctttc
ggtaaactctttaggaagtcgtttctaaggaatcgtttgtttagaggacttgactcctgg
cctccatccttttgtacacgaaaacctcgcagatttgacagtgagcttccagatatctca
ttgagtgacttgcagtttttgcagtctttttgtccttcagaagtacagccattactcagg
gttcccatactttgtgactttgaacctcttcaccagcatgtacgtgctctacataacctg
gtcaaggcagcacagagtttggatgaaatgtcacaaactattacagacctgctgaatgag
caaaaggcctcaaatagtcaagcatcgccacaatctgctaccacaccaaggatggaaagt
actacgggaactgcaattgctacctcttcaagaactcctccatcactcagtcttcagggt
cccctgtgtcctcctgtgtgtcccccagctccattagaagaattgtctccagacagcatt
gatgctcacacgttcgattttgaaactattgcccatccaaacttggagcaagctcttaag
caaggatcattagacttggattcattggcagagagtccagaatctgactttatgtcagca
gtaaatgagtttgtaatagaagaaaatccagtgtctcctaatgtaataagtgacccacaa
agcccggaaatgatggtggaatctctttattcttcagttatcaatgcaatagatagtagg
cgtatgcaagatacaagttcttgtgtaaaggatgtttcagcagaaaatgcttctctcagt
gtttgtgtggagaagtgtagggttattgctcaagactcaaaggtacatttaagaggcata
aaagaagatctttgccatttcagaacacttgtacaaagagaacagtgtgacttttctaat
tctttaaaatgtacttccttagaaatagtaaatacaattgaaaaggtaaagctttcactt
gaaaaaacactaaatgataaacatcaaaatgaactacagtctttgaaaagtgagtatgaa
actaaaattaataaattattggaggatggtgaagaaaataaaaagaaaatcaaaaagtta
aaaggtgacctgttaggtctcgaggaagttcttcagaataagaatgatgaatttgcaata
gtaaagaatgagaaagaagctgtggtttgccttcagaatgaaaaagaccaaaaattactt
gaattggaatgccaaatggagacacaaaattctgaaatcaaggaactgaggcagtcacgt
gaaattgtacttgaagacttgaaaaaacttcatgttgaaaacaatgagaaactacaactc
ctgagggcagaacttgagagtttagagcaaagccatttaaaagaactggaaagcaaccta
caagccagacatttacaggaatttgagaaggtcctagctgagcacaaggactgtttggat
aaattaaaaaaagagaacgagcatagacttgaacaaatgcaggaatctcatgaggtagtt
atgcaagagaaacagcaacaagtagaagagttacaactcaaggtttcagatctgtctgat
ttgaggtgcaaactagaagttgaacttgcccttaaagaggcagaaactgatgaaatgaag
cttcttttggaagaaagcagaaaccagcaacaagagaccttaagatgtcagattgacaag
gaaactgaaagcttaagaaacgagatagataaattaaacaataaaatacaaatcagcagt
gatgaatatcaagtgggtttatcagaactaaggactctgctgacaattgagaaagatcaa
tgtatttctgagctagtaaatagatatgaagaagaatcaaatttgcttagaactgaatta
aataaagtaacgcttcttcatcaaaaaactgctgaggcagaaaaaagactttcagaccaa
ataacagaactgcaaagtaagttggagttggaaatgactgccctagagaaggaaaaaaca
gaaaaaatgtctctctgtgagcagcaggaaaaatatgaagctattatccataagctaaag
gaagagaaagaactgttaatatctaaccaagaacaagacaggcagttgctcattcagaag
ctcaattgtgaaaaagaggatgcagtacaaactgcttgtaaagagttggaattacagagg
gaagctgctgaaaaagggcttttggaaaaaatactgcaacttgagatgcaagtgaatagg
agtcctcctgctgaatcatctgctgaatcaaacttagttgctgaacttcaggagaagctt
caggaagaaaaaatgaagtttttagagcaacttgaagaacaagagaaaagaaagaacgaa
gaaatgcagaacatcagaacatcactcactgcagagcaacagaccaacttcaacactgtt
ctggcaagagagaaaatgaaaaaagaaaacataattaatgatcttagtgacaaattaaaa
gtgcttacgcaacagcaagaaaaagacaaggatttgattgaaacactttctgaagataga
gctcgcttacttgatgagaagaagaaacttgaagaagaagttaataaactgagaagcagt
aattattctccatcaacctacttggcagcagcatcagaagtttgtggagcctgtgcagct
gatgtgcccacagacacagacagattggttgctgactttggggctgaggggagaatggat
tccacaatggaaaccagtatgatggctgtgcatgaaaatgttcatatgtctgaagaaaag
cagaggataatgttgctagaaagaactttgcagttgaaagaagaggaaaataagagatta
aatcaaagattgatgtcccaaagcatgtcatcagtatcctcaagacattctgaaaaaata
gcaattagagattttcaggttggcgatttggtactcattatcttggacgaaaggcatgac
aactacgtgttgtttactgttagtccgaccttgtatttcttgcactcagagtcccttgct
gcactggatctcaaaccaggtgagtgtgcatcaggtgcatctcggagaccgtgggtgtta
ggaaaagtgatggaaaaggagtattgccaggcaaaaaaggcacaaaacagatttaaagtt
cctttgggtacaaaattctacagagtgaaagcagtaccatggaacaagaaagtataa
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