Legionella spiritensis: NCTC12082_01197
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Entry
NCTC12082_01197 CDS
T06800
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lss
Legionella spiritensis
Pathway
lss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12082_01197 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lss03019
]
NCTC12082_01197 (deaD)
03009 Ribosome biogenesis [BR:
lss03009
]
NCTC12082_01197 (deaD)
Enzymes [BR:
lss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC12082_01197 (deaD)
Messenger RNA biogenesis [BR:
lss03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC12082_01197 (deaD)
Ribosome biogenesis [BR:
lss03009
]
Prokaryotic type
rRNA helicases
NCTC12082_01197 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
VEG90769
LinkDB
All DBs
Position
1:complement(1353773..1355476)
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AA seq
567 aa
AA seq
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MTQELANFADLRLSDVLLKALEDMKFQTPSPVQAQTIPWLLQGRDVIAQAQTGTGKTAAF
ALPILQQLLPNSRATQALILAPTRELAIQVAEQFETLSKHQKGTTVSVLCGGQDYRRQLT
QLRDGAQIVVGTPGRILDHIERGTLKLDNLSTFILDEADEMLRMGFIEDVEAILAKLPDN
KQFALFSATMPYRIRQIANSYLRDPVSVEIRSATATVQSTEQRFLFANPAQKPDALLRVL
AVEDYQGVIVFVRTKSSTEDVAEILQSQGYRAMAIHGDITQVLRERIIAQFRQGAIDILV
ATDVAARGLDVERVTHVINYDVPHDCETYVHRIGRTGRAGRSGITVLFITPRESRILNTI
ERHTRQRIEKITVPDDHRIHQIRQLRLMASISERLTHQHLPGYQRIIAEFMKNHPESSIA
DVAAALALMLNQDKPWQKELPKPPRAEKESRRRESKEFKSGSGRGGESLERGFSKHSKVG
KKHGRDDDSQELYRIDIGRIHGVKPGNIVGAIANEGGLQSRFITRLKIHEDHSTVCLPKD
MSREVFQDLNKAWVCGRPLKLTSLGSA
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgacacaagaattagcaaattttgctgacctccgtttatccgatgtcttgttaaaagcc
cttgaggatatgaaatttcaaaccccctcaccggttcaggcacaaaccattccgtggtta
ttgcaaggccgtgatgtgattgctcaggcgcaaacgggaaccggcaaaacggcagcgttc
gctttgccgattctgcaacaactgttgccaaactccagagccacacaagcactgattctg
gcaccgaccagagaactggctatccaggtggctgaacaatttgagacgctgagcaaacat
cagaaaggcacaacggtgtcggtattgtgcggcggccaggattatcgccgtcaattaaca
caattgcgggacggggcgcaaattgtagtgggaacccctggccgtatacttgatcacatt
gagcgaggcacgctgaagcttgataatttgtctacatttattcttgatgaagccgatgaa
atgttacgtatgggttttattgaggatgtggaagctattcttgccaaactccctgataac
aaacagtttgcgttattttccgcgaccatgccctaccgtattcgccagattgccaacagt
tacctgcgtgatccggtttctgtggaaattcgttcggcaacggccacggtgcaaagtacg
gaacagcgatttcttttcgccaaccccgcgcagaaacccgatgccttgttgcgtgtcctt
gctgtggaagattaccagggcgttatcgtatttgttcgcacgaaaagcagcaccgaggac
gtcgctgaaatattacagagccagggttaccgggctatggccatacacggtgatattacc
caggtgttaagggagcggattatcgcccagtttcgccagggtgccattgatattctggtt
gctaccgacgtggcggcacgtggtctggatgtggagcgggttactcatgtgattaactac
gatgtgccacatgattgtgaaacatacgttcatcgtataggccgtaccggccgcgccgga
cgaagcggcattaccgtgctgtttataacaccgcgagaatcacgtattctcaatactatt
gaacgtcatacccgccagcgcatagaaaaaattacggtaccggatgatcacaggatccat
cagatcaggcagctgcgtttgatggctagtatcagcgaacgtttaacccatcagcattta
ccgggttatcagcgaattattgcggaatttatgaaaaatcatcctgaaagttccatagcg
gatgtagcggcagccctggccctgatgctcaatcaggataaaccctggcaaaaagaattg
cctaaaccaccgcgtgcggaaaaagaaagccgccgtcgtgaaagcaaagagttcaaatcc
ggtagcgggcgtggcggtgagtctcttgaacgtggtttttccaagcactccaaagtcggg
aaaaagcatggtcgtgacgatgactcccaggagttataccgtattgatattggtcgtatt
catggggtgaagccgggcaatatcgtcggcgcgattgccaatgagggcggactgcaaagt
cgttttattacccggttaaaaattcacgaggatcattccaccgtttgtttgccgaaggat
atgtccagggaagtatttcaggatttgaacaaagcctgggtttgtggccggccgttgaag
ctgacgtcgcttggcagtgcgtag
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