Legionella spiritensis: NCTC12082_02629
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Entry
NCTC12082_02629 CDS
T06800
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma 70 factor (RpoD)
KO
K03086
RNA polymerase primary sigma factor
Organism
lss
Legionella spiritensis
Pathway
lss02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lss00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NCTC12082_02629 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lss03021
]
NCTC12082_02629 (rpoD)
Transcription machinery [BR:
lss03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NCTC12082_02629 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
HTH_20
HTH_11
Motif
Other DBs
NCBI-ProteinID:
VEG92167
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All DBs
Position
1:complement(2917111..2918994)
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AA seq
627 aa
AA seq
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MSTNDQEQQLSQITKVIRLGKEQNYLTYAQINDLLPNIVDTEHFDDIISMLESMNIKVFE
LPPSEDELALLGNTEEAPEDVEEAAAVLASVDKETGRTTDPVRMYMREMGTVELLTREGE
IRIAKRIEEGIYQVLKSLAHYPETVQLVLEDYQRVQDEEMRLSEIISGFSDSDDDEAPAA
NIGSMLDESQQEQILEREEIESTDEEGDGDGGGLTETDDGPNPEQAKAYFDELQTTYDSA
MDALRNKGRTDKVTVELMEIMSESFLKLKLTSRQVDKLTRHFRQLRNHIREFERGIMRLC
IEKARIPRKLFIDTFPGQETDQTWLDTLTGKQAKKLDLERIAEYRDEIIRLQTRLAAFEE
EYGLTISEIKDINKKMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN
IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQ
ILQETGREATPEELAEKMDLSEDKIRKVLKIAKEPISMETPVGDDDDSHLGDFIEDNNIE
SPVDRATAEGLREATLEILETLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQ
IEAKALRKLRHPSRSEKLRSFLEGDES
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgagcacaaatgatcaagaacagcagctctcgcaaatcactaaagtcatcagattaggt
aaagagcaaaattatctaacctatgcccagattaatgatttgctgcccaacattgtcgat
accgaacattttgatgacatcatcagtatgctggaaagcatgaacatcaaggtattcgag
ttacctcccagtgaagacgaactggcgttgctcggtaataccgaagaggcacctgaggac
gttgaggaagcggccgccgttcttgcttccgtcgataaggaaacgggacgcactaccgat
ccggttcgcatgtacatgcgtgagatgggcacggttgagttgctgacccgggaaggtgaa
atacgcatcgccaagcgtattgaggaaggtatttatcaggtactgaaatccctggctcat
tatcctgagaccgtgcagcttgttctggaagattaccaacgggtgcaggacgaggaaatg
cggcttagcgaaatcatcagcggattttccgactccgatgatgatgaggcgccggcagct
aacatcggttccatgctggacgaatcacagcaagagcaaatactggaacgcgaagagatt
gaatcgacggacgaggaaggtgacggtgatggaggcggcctgactgaaaccgacgacggt
ccgaatccggaacaggcaaaagcttattttgatgagctacagactacctatgacagtgcc
atggatgccctgcgcaacaaaggtcgcacggataaggtaaccgtcgaacttatggaaatc
atgtccgagtcgtttttgaaactgaaactgacgtcaagacaggtggacaaactgacccgt
catttcaggcaattgcgtaaccacattcgtgaatttgaacgcggcattatgcgtctttgt
atcgagaaagcccgtatcccccgtaaactgtttattgacaccttccccggccaggaaacc
gatcagacatggctggatacgctgaccggcaaacaggccaaaaaacttgatttggaacgt
attgccgaataccgtgatgaaattatacggctgcaaacacgactggccgctttcgaggaa
gaatacggattgaccatcagtgaaatcaaggacatcaataaaaaaatgtctattggtgaa
gcgaaagcccgccgtgctaaaaaggaaatggtggaagccaacctgcgtctggttatatcc
attgccaaaaaatacacgaatcgcggcctgcaattcctggatttgattcaggagggcaat
atcggcttgatgaaagcggtcgataaattcgaataccgccgtggttacaaattctcaacc
tacgcaacctggtggattcgacaagccatcacccgttccattgcggatcaggcaagaacc
attcgtattcctgtccatatgattgaaaccatcaacaaactaaaccgtatttcccgtcag
attcttcaggaaacaggccgtgaagccactcctgaggaactggctgaaaaaatggatctg
agtgaagataaaattcgcaaggttctgaaaattgcgaaagaacccatttccatggaaaca
ccggtcggtgatgacgacgattcgcatctgggtgattttattgaggataacaatattgaa
tcccctgttgatcgggcaacggcagaaggtctgcgtgaggccaccctcgaaattctggaa
acattgacgcctcgtgaagcgaaagtacttcgcatgcgtttcggtatcgagatgaatacc
gaccataccctggaagaagtaggcaaacagtttgacgtcacacgcgaacgcatacgccag
attgaagccaaggcattacgcaaacttcgtcatccgtcacgttccgagaaattacgcagt
ttcctggaaggcgatgaaagttaa
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