Leptospira santarosai: LSS_17890
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Entry
LSS_17890 CDS
T03999
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lst
Leptospira santarosai
Pathway
lst03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lst00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LSS_17890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lst03021
]
LSS_17890
03400 DNA repair and recombination proteins [BR:
lst03400
]
LSS_17890
Enzymes [BR:
lst01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LSS_17890
Transcription machinery [BR:
lst03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LSS_17890
DNA repair and recombination proteins [BR:
lst03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LSS_17890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
EKT85391
UniProt:
K8XWW9
LinkDB
All DBs
Position
I:complement(2950215..2954429)
Genome browser
AA seq
1404 aa
AA seq
DB search
MRSHNDFESITIRLASPERIKEWSYGEVKKPETINYRTLKPEKDGLFCEKIFGTTKDWEC
YCGKFKSIRYKGVICDKCGVEVTHSKVRRERMGHIELAAPVSHIWYYRSVPSRMGLLLDM
TVNQLKSVLYFEKYVIIDPADSGRNRGELIDEEEYHAYLDEYGDKFVAGIGADAIKELLA
RIDVDAEARMIRQKIQDKDKISDKRILKRLEVLEAFRDSGNRPEWMVLDIVPVIPPELRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLALKAPEIIVRNEKRMLQEAVDALFDNSR
RKRAVKGKGNRPLKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKYHEMGLPKK
MALELFKPFIMKRLVDLDLAPNIKSAKKKVEAEDKEVFDVLEYVVKEHPVMLNRAPTLHR
LGIQAFLPILVEGKAIKLHPLVCHAFNADFDGDQMAIHVPLTPKAQLETWMLMLSPHNIL
NPANGHPICGPTQDIVLGIYYLTSELPSAPGVPLKSFSNLDEVHYAIDRGVVEYRTKISV
YHQGKILETTPGRLIFNTILPEGYAYVNKPLSDKETNRIIADVYDKYGPAKTVLMLDDIK
KLGYRYATLFAPTISIEDIRVSPGKVGLVGDANKEVEKADSEYRKGIITNEERRKKVIEI
WTKTNDLITDSMFKELEKDKGGFNPVFIMAASGARGSKQQIRQLAGMRGLMAKPSGEIIE
LAIRSNFREGLSVLEFFISTHGARKGLADTALKTADAGYLTRRLVDISQDVIISEDDCGT
EESISLGVVKEGENVIVSLNDRVFGRYTAEDVIDPVTDNVVYPRNTLITREVGQKVENLG
YDKIRVRSPLTCESKQGVCIRCYGMDMARLIPAEIGEAVGTIAAQSIGQPGTQLTMRTFH
IGGAASAKVQEKEHKVSYTGIVNNINGRLIRNDKEQNIFSRRGSIVIQRLIQQYKTEELS
NLRVENGQKVDKGELVATSPSGENITSEMPGTIHIENGIFRILGEEAVIPVKTGTVVNVK
VNDITQPNQPLAEFDPYNEVGISEIEGTVQWMDLEIGKNVRRDEDVKTSNILLKVIEQRR
EKLNPRITVVSGSSREEYSVPVDAIISVQDGDKVKGGDILFKIPTVAEKTRDITGGLPRV
DELFEARRPKDATTLAETDGKIEISGEIVKEKRVLYIHPDNPDQEKVKVTIPIGKQIRVR
NGDFVKRGDQIDDGNLDPHDILRVKGVTALQVYLVQEVQEVYRLQGVHINDKHIEVVVRQ
MLRKVLITDSGDTSFVNQQQIDRLVFNDENKRVIAEGGSPAESVPILLGLTKASLNTESF
FSAASFQETTKVLTDAAIKGKTDNLMGLKENVIIGHMIPAGTGTKKYKDIAVFKSTYGDL
DRPLEEEEEEEIPQAIAEESDADE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgagatcccataacgactttgaatcgattacaatccgcttagcttctcccgaaaggatc
aaagaatggtcctacggagaagtgaaaaaaccggaaaccatcaactaccggactttaaag
cccgagaaagacggtcttttctgcgagaaaattttcggaaccacaaaggactgggaatgt
tactgcggtaagttcaagtccatccgttataagggtgtgatctgcgacaagtgcggggtc
gaggtaactcactccaaagttcgtcgcgaaagaatgggtcacatagaactcgcggctcct
gtttctcatatctggtattatcgttccgttccttccagaatgggacttctactcgatatg
accgtgaaccaactcaagagcgttctctactttgaaaaatacgtaatcatcgatcctgcg
gattccggaagaaaccgaggcgaactcatcgacgaagaagaataccacgcatacctcgac
gagtacggcgacaagttcgtagccggaatcggtgcggatgcgatcaaggaacttctcgct
cgtatcgacgtggatgcggaagcgagaatgatccgccaaaaaatccaggacaaggataag
atttccgacaaaagaattctgaaacgtctcgaagttctcgaagcgttccgtgattccgga
aaccgtcccgagtggatggtgctcgacatcgttccggtcattcctcccgaacttcgtcct
atggttcagttggaaggcggacgttttgcgacttccgacttgaacgacttataccgtcgt
gtgatcaaccgtaacaaccgtcttaaaagacttctcgcgttaaaagcgcccgagatcatc
gttcgtaacgaaaagagaatgttgcaggaagcggtagacgctctctttgacaactctcgt
agaaaacgtgcggtgaaaggaaagggaaaccgtcctttaaaatccatctccgacatgctc
aaagggaaacaaggtcgtttccgtcagaaccttctcggtaagagggtggattactccggt
cgttccgtgatcgtagtcggtccagaactcaaatatcacgagatgggacttccgaagaaa
atggctttggaacttttcaaaccgttcatcatgaagagacttgtggacttggacttggcg
cctaacattaaatctgcgaagaaaaaggtagaagccgaagacaaagaagtgttcgacgta
ttggaatacgtagtaaaagaacatcccgtcatgttgaacagagcaccgaccctgcaccgt
ctcgggatccaagcgttcttaccgatcctcgtggaaggaaaggcgatcaaactccatcct
ctcgtatgtcacgcgttcaacgcggacttcgacggtgaccagatggcaatccacgttcct
ctgactccgaaagctcagttggaaacatggatgctcatgctttctcctcacaatattctg
aacccagccaacggacatccgatctgcggaccgactcaggatatcgtactcggaatttat
tatctaacttccgagcttccttcggctccgggcgttcctttgaaatctttctcgaacctg
gacgaggttcactacgcgatcgacagaggtgtggttgaatacagaaccaaaatcagcgtt
tatcaccaaggaaaaattcttgagacgactccgggaagattgatcttcaataccattctt
ccggaaggatacgcatacgtaaacaaaccgctttccgataaggaaacaaacagaatcatc
gcggacgtctacgataaatacggtcctgcgaaaaccgttctgatgctcgatgacattaaa
aaattaggatatcgttatgcgactctgttcgctcctacgatttctatcgaagacattcga
gtgtctccgggtaaagtgggtctcgtgggcgacgcaaacaaggaagtcgaaaaagccgac
tccgagtatcgcaaagggatcatcacaaacgaagaacgccgtaaaaaagtaatcgagatc
tggacgaagacgaacgatctcatcaccgattccatgttcaaggaactggaaaaagacaag
ggcggattcaacccagtattcatcatggcggcttccggtgcgagaggatcgaaacaacag
atccgtcagctcgcgggaatgcgcggtcttatggccaaaccttccggagaaattattgag
ctggcaattcgttcgaacttccgcgaaggactttcggttcttgaattcttcatatcgaca
cacggtgcgagaaaaggtcttgcggataccgcgttaaaaaccgcggacgcaggttacctg
actcgtcgtcttgttgatatttctcaggacgtaatcatctccgaagacgattgcggaacc
gaagaatccatctctctcggcgtggtaaaagaaggggagaacgtaatcgtttccctgaac
gaccgtgtgttcggacgttatacagccgaagacgtgatcgatcctgtgacagataacgtt
gtatatccgagaaacactctgatcacgagagaagtcggtcaaaaagtggagaacctcggt
tacgacaagatccgagttcgttctcctctgacttgcgaatccaaacaaggcgtttgtatc
cgttgttacggtatggacatggcgagattgattcctgcggaaatcggggaagcggtcgga
accattgcggctcagtcgatcggtcagcccggaactcagttgacgatgagaacgttccac
atcggtggtgcggcgtccgcaaaagttcaagagaaagagcacaaggtatcttataccggt
atcgtaaacaatatcaacggacgtttgatccgtaatgataaagagcagaacatcttctcg
cgtcgcggatcgatcgtgatccagagattgattcagcaatacaagaccgaagaactttcc
aacttacgcgttgaaaacggacagaaggtggacaagggagaattggtggctacttctccg
agcggagaaaacatcacttccgaaatgccgggaaccattcatatcgagaatggaatcttc
cgcatcttgggagaagaggctgtgattcctgtaaaaaccggaaccgttgtaaatgtaaaa
gtaaacgacatcactcagcccaaccaacctctcgcggagttcgacccttataacgaagtg
ggaatttccgaaatcgaaggaaccgttcagtggatggatctcgaaatcggtaagaacgta
agaagagacgaggacgttaaaacttccaatattcttctgaaagtaatcgaacaaagaaga
gaaaaactcaacccgcgcatcacggtcgtttccggaagttccagggaagaatactcggtt
ccggtcgacgcgatcatttccgttcaagacggggacaaagtgaagggcggagacattctt
ttcaaaattcctaccgtcgctgaaaaaactcgggatattaccgggggacttccgagagtc
gacgagcttttcgaagcgagaagaccgaaagatgcgaccactctcgcagaaaccgacggt
aagatcgagatcagcggtgagatcgtaaaagaaaaacgcgttctttatatccatccggac
aatccggatcaggaaaaagtaaaggttacgattccgatcgggaaacagattcgggttcgt
aacggagacttcgtgaagagaggagatcagatcgacgacggtaatctcgatcctcacgac
attctcagagtaaaaggtgttacagcgcttcaagtgtatctcgttcaggaagtccaagag
gtttacagactgcaaggggttcatatcaacgataaacacattgaagtcgtggttcgtcag
atgctcagaaaagttctgattacggattccggtgatacgagttttgtaaatcagcaacaa
atcgatagacttgtattcaacgatgaaaacaagagagtcatcgcagaaggcggttctccc
gcggaatcggttccgattcttttgggacttacaaaggcatccttgaatacggaatccttc
ttctcggccgcttccttccaggaaacgaccaaggttcttaccgacgcggcgatcaaaggg
aaaaccgataacttgatgggtctcaaagagaacgtcatcatcggtcacatgattccagcc
ggaacgggaacgaagaagtataaggatattgcggtattcaaatcgacttacggagatctc
gatcgtcctctcgaagaagaagaggaagaagaaatcccgcaagcgattgcggaagaatcc
gacgcggatgaataa
DBGET
integrated database retrieval system
