Lactuca sativa (garden lettuce): 111876414
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Entry
111876414 CDS
T05352
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111876414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsv03041
]
111876414
03009 Ribosome biogenesis [BR:
lsv03009
]
111876414
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111876414
Spliceosome [BR:
lsv03041
]
Complex A
U1 snRNP components
U1 related factors
111876414
Complex B
111876414
Ribosome biogenesis [BR:
lsv03009
]
Eukaryotic type
Pre-60S particles
Helicases
111876414
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
111876414
NCBI-ProteinID:
XP_023728704
LinkDB
All DBs
Position
2:186156057..186159956
Genome browser
AA seq
671 aa
AA seq
DB search
MAAAATKTSAGPRYAPEDPTLPKPWRGLVDGNTGNLYFWNPVTNVTQYQRPSVPKEDPPP
PEVQVQPSSQDDNGVAAASDDVTHERSGNGGSNFSSETNCHSCETTQDTYDAPKETETVA
SGQGGPPYQAHVRSAGSGLSPDAYRQKHEITVSGDNVPPPFTSFEDTGFPSELLRDLLQT
GFSAPTPIQAQSWPIAMQNRDIVAVAKTGSGKTLGYLLPGFIHLKKTRKNPQLSPTVLVL
SPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLRDLANGTDIVVATPGRLNDILE
MRKVSLSEVTYLVLDEADRMLDMGFEPQIRKIVNAVPTRRQTLMYTATWPKEVRKIAADF
MVNPVQVNIGNINELVANKSITQHVEVVAYNEKHRRLEQILRSQEPGSKIIIFCSTKKMC
DQLARNLTRPFGAASIHGDKNQGERDHVLSQFRSGKCPVLVATDVAARGLDIKDIRVVVN
YDFPTGVEDYVHRIGRTGRAGATGEAYTFFGDQDAKHASELVKLLEGANQRVPNQIREMA
SRGGGMGMGGGRSRRWSSDTGGGGYDSSYGGGRGSFSSEKSGNRDSDRDAGGGYQGRSFH
ETMLGGGGGRSPPNKGGSGWGVSNDRSRSRSPERFGNAPPVRSFHQTMMERARPPPVFKF
GEADGNNDGAN
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgctgcaactaaaacttctgctggtccacgctatgcaccagaggatcctact
ctccccaaaccatggagagggctagttgatggtaacaccgggaatctttacttttggaat
ccagtgactaatgtcacccaatatcagaggccctcagtgcccaaggaagatccacctcca
ccagaagttcaggtgcaaccatcttcccaagatgacaatggcgttgctgctgcttctgat
gatgttacacatgaaagaagtgggaatggtggatcaaacttttcttccgaaacaaattgt
cattcttgtgagactacacaagatacatatgatgccccaaaagagacggagacggttgct
tctgggcagggagggcccccttatcaagctcatgtcagatcggctggaagtggtttatca
ccagatgcttatcgccaaaagcatgagataactgtatctggagacaatgtgcccccaccc
tttacatcatttgaagatactggtttcccttctgagttgcttagagacttactccaaaca
ggattctctgctccaactcccatacaagcacagtcatggccaattgccatgcaaaatcgt
gacatagtagcagttgccaagacaggttctggaaagactttgggttacttacttcctgga
ttcattcaccttaaaaaaacgcgcaagaatcctcagttgagtccaactgttttggtttta
tcacccacaagagaattggccacacagattcaagatgaagctgtcaaatttggaaaatca
tctagaatatcttgcacgtgtttatatggaggagcaccaaagggtccccagctaagagat
ctggcaaatgggacagacattgtggttgcgacacctgggcgtttgaatgatattcttgaa
atgagaaaagtgagcctgagtgaggtgacttatttggtgttggatgaagcagatagaatg
ttggacatgggatttgaacctcaaattaggaaaatagtaaatgcggtccccacgcgtcgt
cagactcttatgtacactgccacctggccgaaagaggtgcggaaaattgcagctgatttt
atggttaatccggttcaagtcaacatcggaaacatcaatgaacttgttgccaacaagtcc
attacacagcatgtggaggttgtggcttacaatgagaaacacagacgattggagcaaata
ctgagatctcaagaacccggatctaagattattattttttgttcaacaaagaagatgtgt
gatcagctggcgcgtaatttgacccgcccgtttggtgctgcttcaattcatggagataaa
aatcagggggagagagatcatgtgctcagtcagtttcgctcagggaagtgtcctgtgctt
gtagcaaccgatgttgctgctcgtggactcgacatcaaagatatcagggtggtggtaaat
tatgacttccctacaggggttgaggattatgtacaccggattggaagaactgggagggca
ggggctacaggagaggcttacaccttttttggtgaccaagatgcaaaacatgcatctgag
cttgttaaacttttggaaggagcaaatcaacgtgtccctaatcaaatccgtgaaatggct
tcacggggtggtggaatgggaatgggtggtggcagatctaggcgctggagctccgacact
ggtggtggtggatatgattcaagctatggtggtggaagaggtagcttttcctctgaaaaa
agcggaaaccgtgacagtgacagagatgcaggtggtggctatcagggtaggagctttcat
gaaaccatgcttggtggtggtggtggcagaagcccgcccaacaaaggtggttcagggtgg
ggggtgtccaatgaccgtagtcgtagccgtagcccggagaggtttggtaatgcgccacct
gtacgaagctttcaccagacaatgatggaacgggctcggcctccacctgtatttaaattt
ggggaagccgatgggaataatgatggtgcaaattaa
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