Lactuca sativa (garden lettuce): 111876508
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Entry
111876508 CDS
T05352
Name
(RefSeq) putative tRNA pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lsv03016
]
111876508
Enzymes [BR:
lsv01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
111876508
Transfer RNA biogenesis [BR:
lsv03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
111876508
Prokaryotic type
111876508
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
111876508
NCBI-ProteinID:
XP_023728812
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All DBs
Position
9:19318623..19323480
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AA seq
510 aa
AA seq
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MATSSLRFAFSPLIHSQNSSRLLFSIPNYQTKSIRILGFSTSSPLPDTTLETLAPPPPPS
HSVNNLNPYKWEPYRKKKVVMRVGYVGTDYRGLQMQKDDSISTVEKELETAIYKAGGIRD
SNLGDLQKIAWARSSRTDKGVHSLSTMISLKMEIPEYAWTGDPNGVALANLVNTYLPKNI
RVFSILPSQRSFDARRECNIRKYSYLLPVEVIGVTSNLSTSEIEHHLSDFNTILNSFEGE
HPFHNYTIRKNYRKKYSSKRSPNSGRIADRRAKSSIEPPQAILEKNDEEESSDGEEALET
DETIDESDANGDTLKDVPIPILAKWLHEPDDKDRISASHFRRIFQCSCGKLEQLFGARYV
EISICGESFMLHQIRKMVGTAVAVKRGLLRKDVITLSLNKFSRIVVPIAPSEVLFLRSNN
FSMRTRIGTRPEIVTLVESEEILKDVDDFYKSIMLPQVSEFLDPSRPPWKEWVELLDRNT
GIPDSQLDEVKNAWIAWKGQFRSRDTIAPL
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atggcgacctcttccctccggtttgcattctcccctcttattcatagccaaaactcctcc
agactcttgttctcaatccctaattatcaaaccaaatcgatcagaatcctcggtttctcc
acctcatctcctttaccagacaccactctcgaaaccctagctcctccaccgccgccgagc
cattccgtcaataacctcaacccatataaatgggagccttaccggaagaagaaggtggtg
atgcgcgtcggatacgtcggcaccgattacagaggattgcagatgcaaaaagatgactcc
atatccactgtggagaaagagctggaaacagccatttataaagcaggtgggattcgtgac
agtaacttgggggatttgcaaaagatagcatgggctagaagtagccgaactgataaagga
gttcattctttatcaaccatgatatcccttaaaatggaaatccctgaatacgcctggact
ggtgacccaaatggggtggcacttgcgaatcttgtcaatacatatcttcccaaaaatatc
agagttttcagcattctaccttcacaaaggagttttgatgctagaagggaatgtaatatc
cggaaatatagttaccttcttcccgttgaagtcattggggtcactagtaacttaagcaca
tcagaaatcgaacatcacttatcagacttcaatactatacttaattcttttgagggagaa
catcctttccataactatacaatccgaaaaaattatagaaaaaagtattcctcaaaacga
tctcctaacagtgggcgtatcgccgatagaagggcaaaatcgtcaattgagccaccccaa
gccattcttgagaaaaacgatgaggaggaatcatccgatggagaagaagctcttgagaca
gatgaaacgattgatgaatcagatgcaaatggggatactttgaaggatgtacctattccc
attcttgctaaatggctacatgaacctgatgataaagatagaataagcgcttcccatttc
agaagaattttccaatgttcatgtggaaaattggaacaattattcggagcaagatatgtt
gagatctcgatttgtggggaatcattcatgctgcatcaaatccgcaaaatggtggggaca
gctgttgcagtgaagcgtgggctgcttcgaaaagacgtaattaccctttcactgaacaaa
ttctctcgcattgtggtacccattgctccatctgaagtattgtttttaagatcgaacaat
ttttcgatgagaacacgtattggtacgaggcctgagattgtgactttggttgaatctgaa
gaaatactcaaggatgttgatgatttctacaaatcaatcatgttgcctcaagtttcagaa
ttcttggatccttctagacctccatggaaggaatgggttgagttgttagatagaaacact
ggaatccctgattcccagttggatgaagtcaagaatgcttggattgcatggaaaggacaa
ttccgaagtcgagacacgattgcaccattatag
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