Lactuca sativa (garden lettuce): 111876611
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Entry
111876611 CDS
T05352
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111876611
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsv03041
]
111876611
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111876611
Spliceosome [BR:
lsv03041
]
Complex C
Other components
Step II factors
111876611
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
RRM_DEAH11
Helicase_C
IBR
OB_NTP_bind
DEAD
HA2_C
AAA_22
IBR_1
AAA_19
RRM_1
zf-C3HC4_2
zf-C3HC4
ABC_tran
HA2_N
ResIII
zf-RING_UBOX
AAA_29
Helicase_RecD
Mak10
Motif
Other DBs
NCBI-GeneID:
111876611
NCBI-ProteinID:
XP_023728927
LinkDB
All DBs
Position
5:111901880..111910759
Genome browser
AA seq
1731 aa
AA seq
DB search
MRSDQFAPGYRNRASYMANNWSFDQYHHHRRRDRDCPPPSSTIRRRPNFVIELCSQNNDH
NTYNRHEIVTLMGKFTCDPDDFFIYEKGVVAGRFFYQQWPNALETIVYLWEVLLNGGLSF
MPRLRQNLIVPSDTEEYNSRLRVLFSERIKRFIEGELVKTWEKKLDQVSNEIAKIDGLLR
KPKKYVTHMELSKKKEGFVREKLLIGKRIGEFKSGMECILDYVNGKVIDSSDVKVLKLKG
NIVWSKIHWLIKRECRRLDDGLPIYADRKEIIWQIHCQQALVLVGETGSGKSTQLVQFLT
DSEVAANKSIVCTQPRKLAAMSLATRVQEETRGCLEDNSVICSPTYSSLQFDSRVIYTTD
HCLLQHYMNDKNFSSISCIIVDEAHERSLNTDLLLALIKDLLHRRSDLRLIIMSATADSD
QLSKYFFGCGTFHVVGRTFPVDIKYIHSHSHSDSGFIPNYVSDVVRTVGEIHRNEGPGTI
LAFLTSQMEVEWACEQFKLMSTVALPLHGKLSHDEQHRVYLDYPDKRKVIFSTNLAETSL
TIPGVKYVVDSGMVKESRYEPTTGTNVLRVSQVSQSSANQRAGRAGRTEPGKCYRLYSEA
DFKSMPFHQEPEIRQVNLGIAVLRILALGIHDVNTFDFIDAPSDSAIESAIKNLVQLGAI
VFENGVHKLTKDGRMLVKLGIEPRLGKMILKCFEHRLGREGVVLAAVMANSSSIFCRVGR
EEDKQKSDCYKVQFCHPGGDLFTLLSVYRNWEQIPREKRNQWCWDNSINAKSMRRCQEAV
IEIENCLQNELNIIIPTYWHWTPESNSKSEYDNILRDVILSALAENIAMYSGNDNLGYQV
ASTGTHVHLHPSCSLLIFNERPDWVVFGEIIAMPNQYLVCVSAVNFESLHTLSPPEFNIS
QIDRRKLQSKVLTGFGSTLLKRFCGKANSSLKHLLSQIRDVVKDDRIGLEVSVDRNEVHI
FASTEHMDRVFEFINAALEREMKWLENECIEKTLFSGRHTSSPVALFGAGGEIKHLELDK
KCLTVDILVSCSSDVEEKELLSLLETRFSGKICSVHRFPFPGATDKMEKWGRVTFLTPEA
AENAIKLSTIDIPGGLLTIVPSRHGGENKFLTFPAVKAKISWPRRRNRGIAFVKCESPDD
IPAIIQDFSMAFIRGRSIRCKPSMKSNDSVMLVGIDNDIFEAELFDELRSATNRNIVDIY
LPRGMIIQDPSIVALEEALLREIRAFMPVGNNNRNECVGVHIFEPELADYFMKAEISFDG
SLHLEAAKALEQIDGKALSGCQPWQKMKSQQLFHSTVSCSASVYMVIKDQLHSLLKHLEL
RNGAKFLFDKNDNGSYRVKISAKATKIMAESRRPLEELMNGKTVSDPRLTTPILQLVLSR
EGFAIQKSIQRETGTYFLFDRHNQSIRIFGPLTNIDRAQNRFVNALVTLHETKQLDIHLR
GPDFPPDLMKKVVGKFGPDLHGLKEKFPGSDFTLNTRHHTISVRGNKELKQNVEETIHHL
VKTSPDAESQSQAASCPICLCDVEDGFRLEKCGHEFCRMCLMEQCESAIKSHSGFPMICA
HENCPAMILTVDLRSLLAAEKLEELFRASLSSFVGSSAGKYKYCPSPDCPSVYRVAMKEG
GGGQPFVCGACSVETCTRCHLEYHPFLSCDKYLEFKRDPDMSLKEWMRGKEDVRVCPSCG
FTIEKIEGCNHMECRCGRHICWVCLEVFNNSGECYRHLSTVHHANEGLVVI
NT seq
5196 nt
NT seq
+upstream
nt +downstream
nt
atgcgcagtgatcaattcgctcctgggtaccggaacagagcttcttatatggctaacaac
tggtcattcgatcagtatcatcaccaccggaggcgagatcgagactgtcctccaccgtcc
tccaccatccgccgacgtcccaatttcgtaatagaactatgttcccaaaacaacgatcac
aacacctacaatcgtcatgaaattgtaactctgatggggaaattcacgtgcgaccctgac
gatttttttatttacgaaaagggtgtggttgctggtaggtttttctaccagcagtggcct
aatgcgctcgaaacgattgtttatttgtgggaggttttactgaacgggggtctctccttt
atgccgaggcttcgacagaatttaatcgtcccttctgatacagaggagtacaattctcga
cttagggttttgtttagcgagcgtataaaaaggtttatagaaggggagctggtgaagaca
tgggagaagaagctggatcaggtttccaacgagattgctaagatagatggcttgctaagg
aagcccaagaaatatgtgacacacatggagttatcaaagaagaaggaagggtttgtacgc
gagaaactgttgatcggcaagaggattggagaattcaagtctggaatggaatgtatactt
gattatgtcaatgggaaggtgattgatagttctgatgttaaggtgttgaagctgaaaggc
aatattgtttggagtaagattcactggttgataaaaagggagtgccggaggcttgatgat
ggattgcctatttatgctgatcgtaaggagattatttggcagatacactgccaacaggca
ttggtattggtaggagaaacaggttcaggaaaaagcacacagctggttcagttccttact
gattcagaagtagctgccaacaagtccatagtttgcacccaaccccgcaagcttgctgcc
atgtcgcttgccaccagggtccaggaagaaacccgtggatgtttagaggacaattcggtc
atttgctctccaacttactcatctcttcaattcgattccagagttatatacacaaccgat
cactgcctacttcaacactacatgaacgacaagaatttctcctcaatttcctgcatcata
gtcgacgaggcacacgaaagaagcttaaacacagatctcctgttagcattaattaaggat
ttacttcaccggagaagcgatctccggcttattataatgtcagccaccgctgattccgat
cagctttccaagtactttttcgggtgtggtacgtttcatgtggtcggaagaacttttcca
gtcgatatcaaatacatccattcccattcccattctgattccggtttcatccccaattat
gtttccgatgtggtcagaacggtcggcgagattcatcggaatgagggaccggggacaatt
ctcgcgtttttaacctctcaaatggaggttgaatgggcatgtgaacagtttaaacttatg
tccactgttgcgttaccactacatgggaaattgtcccacgacgaacaacaccgggtgtat
ttggattaccctgataaaaggaaagtgatattctcaactaatcttgctgaaacctcgctc
acgattccgggagtcaagtatgttgttgattccggtatggttaaagagagccggtacgaa
ccgacgaccgggacaaatgttctgcgggttagccaggttagccagagttcggctaaccaa
cgagccgggcgcgccgggaggactgaaccaggaaaatgttaccggctctactcggaagct
gattttaagtcaatgccgttccatcaggaaccggaaatccgtcaggtaaaccttggaatc
gcggtgcttcggattctcgccctcggaattcatgatgtcaacacgtttgatttcatcgat
gccccttccgattccgctatcgagtctgccatcaagaatcttgttcagttgggtgcgatt
gtgttcgagaatggtgtccataagttaacgaaagatggtcggatgttggtgaagttaggg
atcgagccgaggctggggaaaatgattctcaaatgttttgaacaccggttggggcgagaa
ggggtggttcttgcggcggtaatggcgaattccagcagcattttttgtagggttggtaga
gaagaagataagcagaaatctgattgttacaaggtccagttctgccatccgggtggcgat
ttattcactttgctctctgtttaccggaattgggaacaaatccctcgtgagaaaagaaat
caatggtgttgggataacagcataaacgctaaatctatgcgaagatgtcaagaagccgtg
atcgaaattgaaaattgtcttcaaaatgagctcaatatcatcattccgacatactggcat
tggactccggaatcgaattccaaatccgaatacgataacattctccgggatgttatcctc
tcggctttagccgaaaacattgcaatgtactctggaaacgataatctcgggtaccaagtg
gcatctactgggacccacgttcatttacacccttcctgttctctcctaatcttcaatgaa
cgaccagattgggttgtttttggggaaattatcgcgatgccaaatcagtatttggtctgt
gttagtgctgtgaattttgaatctctgcatactttgtcacctccagaattcaatatctca
caaattgaccgccggaaactacaatcgaaggtgttgacaggtttcggaagtacattgcta
aaacggttctgcgggaaggccaattcaagtcttaaacatcttctttcccaaatcagagat
gttgtaaaagatgaccggattgggctcgaggtctcggtcgaccgaaacgaagtccacata
tttgcatccactgaacacatggatcgggttttcgagtttataaatgctgcattggagcgt
gaaatgaaatggttagaaaacgagtgcattgaaaaaacactgttttccgggcggcatacg
tcatctccggtagctttgttcggtgctggaggtgaaataaaacaccttgaactcgataaa
aaatgtctcacggtggacatattggtgtcctgttcctccgatgttgaagaaaaggaactt
ttatcgcttctcgagacacggttttccggcaagatttgctccgttcatcgcttccccttc
cccggggcgactgacaagatggagaagtggggccgggtaacttttctcacgccggaagcc
gctgaaaacgcgataaaattgagcacaatcgatatcccaggtggcttgctgacaatcgtc
ccctcgagacatggcggggagaacaaattcttgacttttccggcggtcaaagcgaaaatt
tcatggccacgtaggcgaaaccgggggattgcttttgtaaaatgtgaaagcccagatgac
attccggccattattcaagatttttcaatggccttcatccgggggagatctataagatgc
aaaccgagcatgaaatccaacgacagcgtgatgttagttgggatcgataatgatattttt
gaagctgaacttttcgatgagttaagatctgcaaccaatcggaatattgtggatatttat
ctgccccggggtatgataatacaagatccctccattgttgctcttgaagaagcacttttg
agagaaatccgggcttttatgcctgttgggaataataataggaatgagtgtgttggtgtt
catatctttgaacctgagctggcggattattttatgaaagcagaaattagttttgatggg
agtttgcatttggaggccgccaaagcgttggagcagattgatgggaaagcgttgtcaggg
tgtcagccatggcagaagatgaagagtcaacagctgtttcacagcactgtttcctgctct
gcttcagtttatatggttataaaggaccagcttcattctttactgaaacacctcgagctt
cgaaatggcgccaaattcttgtttgacaagaatgataatgggtcatatcgcgtcaaaatc
tcggccaaagccacaaaaatcatggcagaatcaagaaggccgttagaagagttgatgaat
ggaaaaacagtaagcgaccctcgtctcaccactccaattttacaactggttctctcccgt
gaaggattcgctatccagaaatcaatccaacgtgaaacaggcacttactttctcttcgat
agacacaaccaaagcatccgaatctttggcccgttgaccaacattgaccgggcccaaaac
cggttcgtgaacgccctcgtcacacttcatgagaccaaacagctcgatattcatctccgt
gggcccgatttccctcccgatttaatgaaaaaggtggtcggaaaattcggccctgacctc
cacgggctcaaagaaaaattcccgggatctgatttcaccctcaacactcgccaccatacc
atctcggtccgtggaaataaagagttaaagcaaaacgtcgaggaaacaattcaccatctc
gtgaaaacgagtcccgacgccgaaagtcaaagtcaagctgccagctgtccgatatgtctt
tgtgacgtggaagatggtttccgcctagaaaaatgtgggcacgagttttgcaggatgtgt
ctgatggagcaatgcgagtccgccatcaaaagccactcgggtttcccgatgatttgtgct
cacgaaaactgtccggccatgattttaaccgtggatttgcggtcgcttttggcggcggaa
aagctcgaagagcttttccgggcttcgttaagttcgtttgtgggatccagcgctgggaaa
tacaaatactgcccttcgccggattgtccgtcagtgtaccgggtggcgatgaaagaaggc
ggtggtggccagccgtttgtttgcggggcgtgttcggtggagacgtgtacacgctgccat
ttggagtatcatccctttttgtcatgtgacaagtatttggagtttaagcgggacccggac
atgtctttgaaggagtggatgagagggaaggaggatgtgagggtatgtccgagctgtggg
tttaccattgagaaaattgaagggtgtaatcacatggagtgtaggtgcggacgccatatt
tgttgggtgtgtcttgaagtttttaataacagtggggagtgttatcgtcatttgagcacc
gtgcatcatgcaaatgaagggttagtagtaatttga
DBGET
integrated database retrieval system
