Lactuca sativa (garden lettuce): 111876767
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Entry
111876767 CDS
T05352
Name
(RefSeq) uncharacterized protein LOC111876767 isoform X2
KO
K24155
rabconnectin-3a
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
111876767
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsv04131
]
111876767
Membrane trafficking [BR:
lsv04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
111876767
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
111876767
RAVE complex
111876767
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WDR55
Beta-prop_EML
Beta-prop_EML_2
Beta-prop_TEP1_C
Beta-prop_WDR36-Utp21_1st
EIF3I
Beta-prop_IFT140_1st
WD40_Gbeta
ANAPC4_WD40
DUF7193
Motif
Other DBs
NCBI-GeneID:
111876767
NCBI-ProteinID:
XP_023729101
LinkDB
All DBs
Position
4:52553145..52561839
Genome browser
AA seq
2274 aa
AA seq
DB search
MRVPTTGVGKATSSAAATELSTKSDAAFDLTHLDLPFQLIKSETIPPAPTRTESAIDWLP
DYLGHAWIAYAASSLLVISHFPSPSENNESPVDPFFRQVIELSSDGSGDVSAVSWSPSVL
SSGEVAASSDNRIGVFSHNSEGSFCWSQTAILVQATNIKAIKWTGSGDGLISVGIDIVLW
KKKNLSWEISWKFTPEFPQALLSATSSIEGPFATAPLNKDTNNSVLIGHGKSKCIKSELH
HHVPISMIQWRPLVANHWKKKPTNALKMVLLTCCADGTVRLWSEIDDGKSRKTTGKGNKD
QSSFRVAATIEINETLNGILGCDVFIRWATELDGIVNIGKKGTPYFPSEEYHHGKSGKCD
WLISFGPQMMVTFWAIHCIDDFSPLRFPRVTMWKKQELPGSKTGTSFLLNKSFISRNGFF
GPPDVCSVIHLLPNNHLKWLQFHKHTSNTTDSILSIANGALNINGHTGKILQIALHPYGG
YPELAVSLDANGVILFWSFLSSGFKLSGEFVVQDSPCEYTSLRWAPSLIDDHRVLLMGHS
RGIDCFLVEVCEKEDLISCQKLCTIPFDCDENGPTSIFSIPLTSTCNTFLYNKFMVIAIW
KEKDHFQALSWKVTIHPSDTPGGECKYSIDFDRCSSTFPDPYNHDNITSYSVVGMYNFSS
SKEQEKSFVGEMFDNSVAYHIITGSFDGSLKLWRSMDQEWELVGKIAAHVGPIMKINSTD
CGRKIATLSNENTIYIWECVYLGGIGSFLLEDTINLDGGGVVVGFDWLTIGNGQLLLGVC
LQNEVHVYTMRRCVSSEESKDGNENRNIWFCVAKRQTRPCIRDFVWGPKATGVIVHDDYF
CLFSQWVLPNGGSDGFKVPEIIYDSDTHAFENLKLKDQQKYNNTNNTGIGVRSVLEIAEN
VGGSLPTYHPEALLVNIYSGNWKRAQSALSHLFQHLTNNKDLKTNPRIPQMSLSDYLEGL
ILKNSNSKAFKWSGDTYSNTSTWDPNSNDFSNSIDSSPKNSGLSGFTDSIEKLHDLSDIE
KMQILAVIDLLDEISNSNTSSPYEGLDIPGRRFWVAVRFQQLYCVRRLGRPPSKGDLVIN
SSLIAWAFQSDCQESLFESLLNNDSSWDEMRTMGVGFWYTNQAQLRVKMERLAKQQFLKN
RDPKACALLYIALNRIQVLAGLFKISKDEKDKPLVAFLSRNFQEEKNKAAALKNAYVLMG
RHQLELAVAFFLLGGDTASAINVCAKTLKDEQLALVICRLLEGYNGPSEHYITSKFLLPS
AYENGDYWKSSFLEWILGNYYKSYLSLIGDQMDFSSNNLAFIDPSIGQYCQMLTNKNQMK
NAIGEQNTSILVRWGVLMSSTALSRCGLPLEALECLATSNSIFSGSTQSALDNSESKILN
ERLNPSSSSSNWVSADVALRMLSHAKYSFAMQYISNMLTEHPSWPENIQTEAIQYNTQLS
NFGKKLNTGLAYFEQKYSLNRHHLINMITGYLYNQDLMFIACDILQHDTSEDISHRNPCY
PSLPAVLLKSIKDFSYLFSRYIIFCRMTCSETKLHSIYMKNLLLMVSKIRNGLKLQSFPQ
SPLFVLDLCEYYIYFASIWFQKDSTSLIIVLKQILLRYSNESSSSSSYGSNMETLKKILP
EIAMLVCHNKMNVGPESDKWQIIRAFLWGLMSGFLKYQIDSIPENLEDKYSVELTRLLKL
ESEDSISYCAKELASFLLRKGRDQSNEPIIFWLEDLCRSTPITTFQNFGQGVDFSRIMSN
EDGLSGFEVLWNVFDNHRMLCGDFVVEYSKWSKLIKQKHSKGWSDTYADIIGDHEASEND
NQDGISSPVTEFTIPFQKPKEVQKANGELLEALCINSIDQQQAAIASNKKGIIFFNFEDG
RTCFDKSNYIWTDVDWPTDGWAGSESTPVPTCVSPGIGLGSRKGTQLGLGGATIGVGLAK
PGITGVNTSSLGWEIQEDFEDFIDPPATVDNIRTRAFSSHPSRPFFLVGSSNTHVYLWEF
GKNTATATYGVLPAANVPPPYALASISAVQFDHCGQRFATAALDGTVCTWQLEVGGRSNV
RPTESSLCFNNYTSDVMYVTASGSIVAAAGYSSNNVNVVIWDTLAPPTTSRASIMCHEGG
ARSISVFANDIGSGSISPLIVTGGKGGDIGVHDFRYIATGRQKRNKNSDNVEQKFNASST
AGLQNKHGDHNRNGMLWYIPKAHSGSVTRIAAVPNTSFFLSGSKDGDVKLWDAKNAKLVY
HWPKLHDRHTFLQPTSRGFGGVVRAAVTDIQVVSNGFLSCGGDGSVKLVQLRDL
NT seq
6825 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtgccaactactggcgtcggaaaagccacctcctccgccgccgccaccgaatta
agcaccaaatcagacgcggcattcgatttgacacacctcgacttacccttccaactgatc
aaatcggaaactatccctcctgctccgacccgaaccgaatccgccatcgattggttaccg
gactacctaggtcacgcatggattgcctacgcagcctcgtcgcttctcgtgatctctcac
tttccatctccttctgaaaacaacgaaagccctgtggatccctttttccggcaagttatt
gaactttcctccgacggctccggggatgtctctgcggtttcatggtctccgtctgtgctg
tcgtctggagaagtagcagcctcttcggacaaccgtattggagtattttcacataattca
gaaggttctttttgttggagccagactgcaatccttgtgcaagccacaaacatcaaggcc
attaaatggacaggttcaggagacggattaatctcagttggaatcgacattgtcttatgg
aaaaagaaaaacctctcttgggaaatctcttggaaattcacacccgagttccctcaagct
ttactttctgccacctcatcaatcgaaggcccatttgcaactgcacctctaaataaagac
accaacaattctgtactaatcggtcatggaaaatcaaaatgcatcaagtctgagctccat
catcatgtccccatttccatgatccaatggagacctttagtagcaaaccattggaaaaag
aaacccacaaatgccctcaagatggttttgctaacatgttgtgctgatggaactgtaaga
ttatggagtgagattgatgatggtaagtccaggaagacaacagggaagggcaataaagac
caatcatcttttcgagttgctgccacaattgagataaatgaaaccctaaatggcattctt
ggttgtgatgttttcataagatgggccactgaacttgatggtattgttaacattggtaaa
aagggtactccatattttccttcagaagagtatcaccatggtaaatctgggaaatgtgat
tggttaatttcttttggtcctcaaatgatggtaaccttttgggctatccattgtattgat
gatttttcaccacttagattcccacgagttacaatgtggaaaaagcaagaattaccaggt
tccaaaacaggaacaagctttctactaaacaaatctttcatatcaagaaacggattcttt
ggcccaccagacgtatgctctgtaattcacttattacctaataatcatttgaagtggtta
caatttcataaacacacatcaaatacaactgattcgattttgtctattgctaatggagct
ttaaacataaatggtcacactggaaagattttgcaaattgcattgcatccttatggaggt
taccctgaacttgctgtttctttggatgctaatggagtgattctattttggtcatttttg
agctctggcttcaagctttctggagagtttgtagttcaagattctccatgtgaatacact
agcttgaggtgggccccttcattaatagatgatcacagggttttactaatgggacattca
agaggcatagattgctttttagttgaagtttgtgaaaaagaagacttgatatcatgtcag
aaactatgtactatcccttttgattgtgatgaaaatgggcccacgagtatcttttcaatt
cctttgacttctacatgtaacacctttttgtataacaaatttatggtgatagctatatgg
aaagagaaggaccactttcaggcattatcatggaaagttacaattcatccttcagatacg
ccaggtggcgaatgtaaatacagtattgactttgaccggtgttcatctacatttccagat
ccatataaccatgataacattacaagctattctgtggttggtatgtataacttctcttca
tctaaagaacaggagaaaagttttgttggtgaaatgtttgacaattctgttgcatatcat
ataattactggttcttttgatggtagtttaaaactatggagaagtatggatcaagagtgg
gaattagtaggcaaaattgctgctcatgtgggcccgattatgaaaataaattcaactgat
tgtggtagaaagattgcaactttatctaacgaaaacactatttatatatgggaatgtgtg
tatcttggaggaattgggagttttttacttgaagataccataaatcttgatggaggtggt
gttgttgttggttttgattggttgactataggtaatggtcaacttctgcttggagtttgc
ttgcagaatgaagtgcatgtgtataccatgaggcgttgtgtaagttcagaagaatccaag
gatggaaatgaaaatagaaatatttggttttgtgttgcaaaaagacaaactcgcccctgt
atccgtgattttgtttggggacctaaagcgacaggtgtgattgttcatgatgactacttt
tgtcttttcagccagtgggtacttcctaatggtggatcagatggatttaaggtccctgaa
attatttatgattctgatactcatgcttttgaaaacctgaaattgaaagatcaacagaaa
tataataataccaataatacaggtattggtgtaaggagtgttttggaaatagcagaaaat
gttggtggatctcttcctacttatcaccctgaagctcttttggtgaatatttattcagga
aattggaaacgtgcacaaagtgcactgagtcatctctttcagcatcttacaaataacaag
gatttgaaaacaaaccctagaatcccacaaatgagcttgtcagactatcttgaaggacta
attttgaaaaattcaaacagcaaagcgttcaaatggagtggtgacacatattcaaacaca
tccacatgggatcctaattccaatgatttcagcaattcaatcgattccagtcctaaaaac
tctggattgagtggattcactgattccattgagaagctacatgacctttcagacattgaa
aagatgcaaattcttgctgttattgatcttcttgatgaaattagcaattcaaacacatca
tcaccatatgaaggtcttgacatacctggtagaaggttctgggttgcagtaaggtttcag
cagctttattgtgtgagaagactagggagaccaccatccaagggcgatttggtcattaac
tcatcccttatcgcctgggctttccaatccgattgtcaagaaagcttgtttgaatcactt
ctgaataatgattcatcatgggatgaaatgagaaccatgggtgttggattttggtacaca
aatcaagcacagttgagagtcaagatggagaggctagcaaaacagcaatttttaaaaaac
agggatccaaaagcttgtgcacttctttacatagctttaaacaggatacaagttttggca
ggtctttttaaaatcagtaaagatgaaaaagacaaaccactggtggcatttctttcacgt
aattttcaggaggagaaaaataaagctgctgctttgaaaaatgcttatgtgttaatggga
agacatcagctggagcttgctgtagctttctttttgcttggaggtgatactgcttctgct
attaatgtctgtgcaaaaactcttaaagatgaacaacttgctcttgtgatttgtcgcctt
cttgaagggtataatggtccatcagaacattatattacatcaaagtttctgcttccatct
gcttatgaaaatggtgactactggaaatcaagtttccttgagtggatattggggaattac
tataaatcttatctgagtttaattggtgaccaaatggatttctcaagcaataacttggcc
tttatagatccaagcattggtcaatattgtcaaatgttgaccaacaaaaaccagatgaaa
aatgctattggagaacaaaatacctcgattcttgttagatggggtgtcttaatgagctct
actgcattaagcagatgtggtttacctcttgaagctttggagtgccttgcaacttctaac
agcatattcagtggttcaactcaaagtgcattagataattcagaatccaaaattctgaat
gagagactgaatccatcttcatcttcttcaaattgggtatctgctgacgtggcattgcgt
atgctctcacatgcaaaatacagttttgcaatgcaatacatttcaaatatgttaacagag
catccaagttggccagaaaatatccagactgaagctattcagtataacacacagctttct
aattttggaaagaagttaaacacagggcttgcttattttgagcagaagtattccttaaat
cgccaccatctgattaacatgattacaggttatttatacaaccaggacctcatgtttatt
gcttgtgatatattgcaacatgacacttctgaagatatttcacacagaaatccatgttac
ccttcactgccagctgtccttctgaagtccattaaagatttttcctatttattttcaagg
tatatcatattttgtagaatgacttgctctgagacaaaactacattccatttatatgaag
aatctcttgctgatggtgtcaaagataagaaatgggctgaaattgcaaagctttccacaa
tcgcccttattcgttcttgatttatgtgaatactacatatatttcgcatccatttggttc
caaaaagattctacaagtctcattattgttttgaaacaaattctgcttagatattccaat
gaatcttcatcttcttcatcctatggttctaacatggaaaccttgaaaaaaatccttccg
gaaatagccatgttggtatgtcacaataaaatgaatgtggggcccgaaagcgataaatgg
cagattatacgcgcttttttgtggggactcatgtctggatttctgaaataccaaattgat
tccattccggagaatcttgaagataagtactcagtggaattgaccaggttactaaaactg
gaatcagaggattccatatcttattgtgcaaaagagcttgcgtcatttttactgcggaaa
gggagggaccagtcaaacgagcccataatattttggttggaagatctgtgtaggtcaacg
ccgataaccacttttcagaattttggtcaaggagttgacttttctagaataatgagtaac
gaagatggattatcaggttttgaagtactttggaatgtgtttgataatcatagaatgtta
tgtggagattttgtggtggaatattccaaatggtcgaagcttatcaaacagaaacattct
aaaggatggagtgacacgtatgcagacatcataggtgatcatgaagcttctgaaaatgat
aatcaagatgggatttcatctcctgtaacggaattcacgattccattccagaaacctaaa
gaagtacagaaagcaaacggagaacttctcgaggcattatgcatcaattccatcgatcaa
cagcaagctgcaatcgctagcaataagaaggggataatattttttaactttgaagacgga
cgaacttgctttgacaagtcaaattacatctggacagatgtcgattggccaacagacggg
tgggcaggatccgaatccacacccgtcccgacatgtgtttcccctggaatcggtctcgga
agccggaaaggcacacagctcggcttaggaggagccacaatcggagtcggtttagcaaaa
cccggaatcacaggggtaaatacgtcaagtctgggttgggaaatccaagaagattttgaa
gatttcatcgatccacctgcaactgttgataatatcagaactagggctttttcaagtcac
ccttctagacctttcttcttagtcggttcaagcaatacacatgtttacctttgggagttt
ggtaaaaacacagctacagctacatacggagtccttcccgctgcaaatgtcccaccacct
tatgctcttgcctcaatctccgccgtacagtttgatcactgtgggcaaagatttgctaca
gctgcattagatggtacagtgtgcacgtggcagcttgaggttggaggaagaagcaatgtt
cgtcctactgaatcatctctctgtttcaacaactacacatcggatgtgatgtatgtgact
gctagtggatcaattgttgctgcagcaggttatagctcaaacaatgtaaatgtagtaata
tgggatacactcgctccacctaccacatctcgcgcttccatcatgtgtcatgaaggtggt
gcgagatctatttctgtatttgcgaatgatataggaagtggttctatttctccacttatt
gtaacgggtggaaaaggtggagatattggagttcatgattttcgttacatagcaaccgga
agacaaaaaaggaataaaaattctgataatgttgaacaaaaatttaacgcgtcttcaact
gctggattacaaaataaacatggggaccacaatcggaacgggatgctttggtacatacca
aaggcccactcagggagtgttactagaatagcagcggttccaaatacgagttttttctta
agtggaagtaaagatggagatgtgaagctttgggatgctaagaatgcaaagttggtatat
cattggccaaaattgcatgataggcatacatttcttcaacctacctcacgtggctttgga
ggggtagttagggctgccgtgacagatattcaagttgtttcaaatgggtttctttcatgt
gggggagatggttctgttaaattggttcaacttagagatttatga
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integrated database retrieval system
