KEGG   Lactuca sativa (garden lettuce): 111876786
Entry
111876786         CDS       T05352                                 
Name
(RefSeq) exosome complex component RRP41 homolog
  KO
K11600  exosome complex component RRP41
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111876786
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lsv03019]
    111876786
Messenger RNA biogenesis [BR:lsv03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     111876786
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     111876786
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 111876786
NCBI-ProteinID: XP_023729132
LinkDB
Position
4:complement(53935161..53936921)
AA seq 241 aa
MEYVSPEGLRLDGRRPLEMRQLRAELGAVSRADGSAVFEMGNTKVIAAVYGPREVQQRSQ
QLNDKALIRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF
VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTALLDLNYVEDSAGGPD
VTVGILPKLDKVTLLQMDAKLPMDIFENVMQLATEGCKAVANYIREVLIENTKQLENRRG
V
NT seq 726 nt   +upstreamnt  +downstreamnt
atggagtacgtgagccctgaaggactccgtttggatggacgacgtcccctggagatgaga
cagcttcgagcagaattaggagctgtttccagagctgatgggtcggcagtttttgagatg
ggtaacaccaaagtcattgctgctgtttatggccctcgagaggtccaacaaaggagccag
caattgaatgataaggcactgataagatgcgagtataccatggctaatttcagtacagga
gatcgaatgagaaaaccaaagggtgacaggagatccactgagatttctttggttattcgt
caaacaatggaagcatgtatactgacacacctaatgccccgttcccaaattgacattttt
gtccaagttcttcaagcagatggaggaacaagatctgcttgcataaatgctgcaacatta
gcccttgcagatgctggcattccaatgcgtgatcttgttacttcatgtagtgctggatat
ctaaacagcactgcccttcttgatttgaattatgttgaagatagtgctggtggccctgat
gttactgtgggaattttacctaagttagataaagttactcttcttcagatggatgcaaag
ttgccaatggatatttttgaaaatgtgatgcaattggctacagaaggatgtaaagctgtg
gcaaattatatccgagaagtgttgatagagaacacaaaacaactagaaaatcggcgtgga
gtatga

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