KEGG   Lactuca sativa (garden lettuce): 111877017
Entry
111877017         CDS       T05352                                 
Name
(RefSeq) UBP1-associated protein 2A
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111877017
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lsv03019]
    111877017
   03041 Spliceosome [BR:lsv03041]
    111877017
Messenger RNA biogenesis [BR:lsv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     111877017
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     111877017
Spliceosome [BR:lsv03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    111877017
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_Nup35 Cut8
Other DBs
NCBI-GeneID: 111877017
NCBI-ProteinID: XP_023729336
LinkDB
Position
5:163894402..163900075
AA seq 499 aa
MAKKRKSRASQPSVEEPVPKEEPQEQIIEPQQQQETIANNDVVKEEELEQEADEIAHNLE
ENKVKGEQEEEEEGEEEDEEDPQDDDEEEESEEEATVNDVKVETNGDGGEETEDLEDEPV
ENLLEPFSKEQLVLLLKEAVAKHPDLIESVQKIADADPAHRKIFVHGLGWDTNAEILTSE
FGKYGEIEDCKAVVDKVTGKSKGYAFILFKHRAGAQKALREPQKKIGNRMTSCQLASAGP
IPAPPPTVPPVSEYTQRKIFVSNVSAEIDPQKLLEFFSKYGEVEDGPLGLDKQTGKPRGF
ALFVYKSVESAKKALEEPHKVFEGHNLNCQKAVDGPKPNKPYFQQQHQHHNHHQHHNQHQ
HQQYGGGGGGHHYPSKKGKYNNSGGGGGGGGAGQGHLMAPSGPSVGGYNPAVPPALTPAL
GQALTALLATQGAGLGNLLGLGGPPQGMPPPMNNPGYGNQAGGSYGGQPGMQGGYPNPQL
GQGGNRPPQGGAPYMGHGH
NT seq 1500 nt   +upstreamnt  +downstreamnt
atggccaagaagcgaaagtctcgtgcttcacaaccttccgtggaagaaccagtacctaag
gaggagcctcaagagcagatcattgaaccacaacagcaacaggaaactatcgccaataat
gatgtcgttaaagaggaggagctagagcaagaagctgacgaaatcgctcataatctggag
gagaataaagtaaaaggtgaacaagaagaagaagaagaaggagaagaagaggatgaagaa
gatcctcaggacgatgacgaagaagaagaaagcgaagaggaagccaccgtaaacgacgtc
aaggtcgaaaccaacggcgatggaggagaagaaaccgaggatttggaggacgaacccgta
gagaaccttctcgagccgttctcaaaggaacaattagtcttactgctcaaggaggccgtt
gcaaagcaccctgatctgattgaaagcgttcagaagatcgctgatgcggaccctgcccac
aggaagatatttgtgcatggtctaggttgggataccaacgctgagattctaacgagcgag
tttggcaagtatggcgagatcgaagattgtaaggctgtggtagataaggtcaccggaaaa
tctaaaggctatgcttttatactcttcaaacacagggccggagctcagaaagctttgagg
gaacctcagaagaagatcgggaaccgcatgacctcatgtcagttggcttctgctggtcca
atcccagcccctccaccaacagtccctccggtgtcagagtacactcaaaggaaaatattt
gtgagcaatgtttctgcggagatcgatcctcagaagcttttagagttcttttctaaatat
ggagaggttgaggatgggccattgggattagataagcagactggaaagcctagagggttt
gctctcttcgtctataagagtgtggaaagtgcaaaaaaggctctggaagagccccacaag
gtctttgaagggcacaatttgaattgccaaaaggctgttgatggtccgaagccaaacaag
ccttactttcaacaacaacatcagcatcacaaccaccatcaacatcacaaccagcatcag
catcaacagtatggtggtggtggtggtggtcatcattacccttcaaaaaagggcaagtac
aacaactcaggtggcggtggtggtggtggtggtgcaggacagggtcatttgatggcacct
tctggaccgtcagtgggtggttacaaccctgctgttcctccggcattgactcctgctttg
gggcaggcgttgactgcacttcttgcgactcagggagctggactcgggaatcttttagga
cttggtggacctccgcaggggatgccgccaccgatgaacaatcctggatatggaaaccag
gcaggtgggagctacggtggtcaaccagggatgcagggtggttaccctaatccacagctt
ggtcaaggaggcaacaggcccccacaaggtggtgcaccttacatgggccatggtcactag

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