Lactuca sativa (garden lettuce): 111877314
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Entry
111877314 CDS
T05352
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 32
KO
K14776
ATP-dependent RNA helicase DDX10/DBP4 [EC:
5.6.2.7
]
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lsv03009
]
111877314
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111877314
Ribosome biogenesis [BR:
lsv03009
]
Eukaryotic type
90S particles
Helicases
111877314
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
111877314
NCBI-ProteinID:
XP_023729610
LinkDB
All DBs
Position
7:complement(196936824..196941962)
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AA seq
745 aa
AA seq
DB search
MKKPKSKQLRIQSRTSEVQEIELLEKWIEFGKPESGSNPLSLPPLPAKSPIGRIDESTYS
QYAGCTKFQQLPLSKNTKDGLRQSGYKNMTNIQRASLPHSLSGRDILGAAKTGSGKTLAF
IIPVLEKLYKARWGIEDGVGSIIMSPTRELADQIFGVLKSVGKHHGFSAGLLIGGNEYDE
EKDRVNRMNILICTPGRLLKHMDTTPNFDCSQLQVLVLDEADRILDAGFKKEVNAIISQL
PKHRQTLLFSATQTKSVKDLARLSLKDPEYVAVDEEAIAATPSRLQQKVMLVPLDQKLDM
LWSFIKAHLNSRILVFLSSCKQVRFVYEAFKKLRPGIPLKCLHGRMKQIKRTFILQQFVE
QRSVLFSTDVSSRGLDFNKGVDWVVQVDCPDDVAGYIHRVGRTARYDSAGRSVLFLLPSE
MKMLDRLQEKKIPVQVDKANTKRLQSVSGLLAALLAKYPDLQPLAQRAFKTYVKSIYKQK
DKEVFDVTKLPIDDYSASLGLPMTPQLRYLDRKSIDKKKLPEESTLLPEVPVQKDLIKIS
SQKESNNLLEESEEDEETLDLLQRKETENDEDLKAIENMLPTTRVLKKKKLKINVHRPVG
SRVVFDEEGNTLPPLARLAAMNADSALLDKDKVLKRYAEMKLDMISRDKEDKILDRQRRK
EKRLKEKEKHKRARDNDDDVDEDDDGFSGSDKDTHNLKKSKVYFDSDGDDDDVARKDEVA
SKTDAISLHEQEELALKLLSSMHSS
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagccaaaatccaaacagttacgtatacagagccgcacatcggaagtacaggaa
atcgaattactggagaaatggatagaatttgggaagccagaatcaggttccaatccatta
tcccttccgccgctgccggcgaagtccccgatcggccgtatcgatgagagtacgtactct
cagtacgccggttgcacgaaattccaacaattacctctgtcaaagaatacaaaagacgga
ttgcgccaatctgggtataagaacatgactaatattcagagggcttcattgcctcattca
ctatctggccgtgatatacttggtgctgccaaaactggatccggcaaaactttagcgttt
ataattcctgttttggagaagttgtataaagcaagatggggtatagaggatggagtaggt
agcattatcatgtctcccactagagagctagcagaccagattttcggtgtactaaaatca
gttggcaaacaccatggatttagtgctggtcttttaattggtggtaatgaatatgatgaa
gagaaagatcgcgtgaatcgaatgaatatattgatttgtacacctggcaggcttctcaaa
cacatggacacaactccaaattttgattgttcacaactacaggttttggtacttgatgaa
gcggatcgtattctagatgcaggatttaaaaaagaagtaaatgctataatttcacaactc
ccaaaacacagacagactttacttttttctgcaacacaaacaaaatcagttaaagatctt
gcacgactcagtttaaaggatcctgaatatgttgctgttgatgaagaagccatagctgct
actccaagtagactacagcaaaaagtcatgcttgttcctcttgatcaaaagctagacatg
ttatggagttttataaaggcacatttaaactcaaggattcttgtttttctttccagctgc
aagcaggtaaggtttgtatatgaagcattcaagaaattgcgtcctgggattcctctaaag
tgcctacatggaaggatgaaacaaataaaacgaacatttatattgcaacaatttgttgaa
caaagatcagttcttttttcaaccgatgtctcttcaagaggtctagatttcaacaaaggt
gttgattgggttgttcaggtggactgccctgatgacgtggcaggttacatacatagagtc
ggtcggactgcccgatatgattctgcaggccggtcagtcttatttcttctcccttcagaa
atgaaaatgcttgatcgattacaagagaagaaaatacctgttcaagttgacaaggcaaac
acaaaacgattacaatcggtttctggtttattggctgcattgctagcaaagtacccggat
ctacagcctttagctcaaagagccttcaaaacttatgtgaaatcaatttacaaacaaaaa
gataaagaagtttttgatgttacaaagcttcccattgatgactactcagcctcattgggt
ctcccaatgaccccacaactccgttaccttgaccgtaaaagtatagacaaaaagaagctg
cccgaggagtccactttgctgcccgaagtgcccgtgcaaaaagatttgataaagatttcg
agtcaaaaggaaagtaacaatttacttgaggaatctgaagaagatgaagagacacttgat
ttacttcagagaaaggaaacggaaaacgatgaggacttgaaggcgattgaaaatatgttg
cctacaactagggttcttaagaaaaagaagttgaagattaatgtccatagaccagtgggg
tcacgagttgtatttgatgaagaagggaacacattgccacctcttgcaagattagctgcc
atgaatgctgactcagcacttcttgataaagataaagtattgaagaggtatgcagagatg
aaactggatatgatctcacgagacaaggaggacaagattttggatcgccaaagacgtaaa
gaaaagagactaaaggaaaaggaaaaacataaaagggcaagagataatgatgatgacgtg
gacgaagacgatgacggcttttctgggtccgataaagacacacacaaccttaaaaaatca
aaagtgtactttgatagcgatggtgatgacgatgatgtggcaaggaaagatgaggtggca
tcgaagacagatgcgatatcgttgcatgaacaagaggaacttgcgcttaagttgttgagc
tctatgcactcatcatga
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