Lactuca sativa (garden lettuce): 111877351
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Entry
111877351 CDS
T05352
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
KO
K14829
pre-rRNA-processing protein IPI3
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lsv03009
]
111877351
Ribosome biogenesis [BR:
lsv03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
111877351
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_CDC20-Fz
EIF3I
WDR55
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_IP5PC_F
Beta-prop_SCAP
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_DCAF12
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_WDR75_2nd
PEP5_VPS11_N
WDR54
Beta-prop_LRRK2
VPS8_N
PROPPIN
Beta-prop_NWD2_C
Beta-prop_VPS8
VPS11_N
Motif
Other DBs
NCBI-GeneID:
111877351
NCBI-ProteinID:
XP_023729641
LinkDB
All DBs
Position
4:complement(133982918..133988457)
Genome browser
AA seq
313 aa
AA seq
DB search
MKEALVVCGDKNLTVGLTIWDIETGDHLLHIPTCASQFHGLTCLRNRYLVASQIHLPGSV
AGGVIFTWPFSKPRSPLRSYTIEAIGPISSTKDGIYLAGGAISGNLYIWEVISGKLLKTW
HAHNSPITCLAFSNDASLLISGSEDGMIVVWPMISLLDDKNIESSDLSLSVSTEHKSFIT
GLLPSSAVSQSVFVSSSLDGTCKAWELVKGTLLQTWSFPQPITAMVVDPLERFLFSGSAD
GRIFMTPFDVGLMKEASFDSEDQKLELNGHKESITALTFCKSGLISASEDSTACLWNVIE
GVIIRRFNHHKGN
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagcattggtggtttgcggagacaagaatttaacggtgggactgacgatttgg
gacatagaaacaggggatcatcttcttcacatacccacatgcgcttcacaattccatgga
ctcacttgtttgagaaatcggtacttggttgcctctcaaattcacctccctggctccgtc
gctggcggcgtcatcttcacctggcctttctctaagcctcgttcacctttacggagttat
acaattgaagccattgggccgatttcaagcacaaaagatggtatatatttggcaggtgga
gccatttctggaaatctctacatttgggaggttataagtggtaaactgctcaaaacttgg
catgcacataattcgccaataacctgtttggctttttctaatgatgcttctctacttata
tctggatccgaagatggaatgatagttgtctggccaatgataagtttactagatgataaa
aacatagaatcctctgatttatcactaagtgtttcaactgagcataaatccttcataact
ggactcttaccatcttcagctgtctctcaatcagtttttgtatcaagctcacttgatggc
acatgcaaggcatgggagcttgtaaaagggacacttttgcagacttggtcttttccacaa
ccgataactgcaatggttgttgaccctttagagagatttctgttttctggaagtgcagat
ggaaggatctttatgaccccatttgatgttggattgatgaaggaggcttcctttgattca
gaggatcaaaaattggaattgaatggacataaggaatctattacagcattgactttttgt
aaatccggtcttatttctgcttctgaggattctactgcttgcttgtggaatgttattgag
ggtgtgatcattcgaagatttaatcatcacaaaggtaattaa
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