Lactuca sativa (garden lettuce): 111878019
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Entry
111878019 CDS
T05352
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111878019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111878019
03041 Spliceosome [BR:
lsv03041
]
111878019
03009 Ribosome biogenesis [BR:
lsv03009
]
111878019
03016 Transfer RNA biogenesis [BR:
lsv03016
]
111878019
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111878019
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
111878019
Spliceosome [BR:
lsv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111878019
Complex C
U4/U6.U5 tri-SnRNP related factors
111878019
Ribosome biogenesis [BR:
lsv03009
]
Eukaryotic type
Pre-60S particles
Helicases
111878019
Transfer RNA biogenesis [BR:
lsv03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
111878019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
ResIII
DEXQc_Suv3
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
111878019
NCBI-ProteinID:
XP_023730298
LinkDB
All DBs
Position
5:246600091..246604695
Genome browser
AA seq
1002 aa
AA seq
DB search
MGSVKRKSLEEGPSASTPPPHKQQKDNRNNDNRLIGTNNEAEAGVACVHDCSYPENYVAV
PRRSNTEEDSKPAKEFPFTLDPFQAEAINCLNAGESVMVSAHTSAGKTVVASYAIAMSLK
NKQRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGS
ELTREVAWIIFDEVHYMRDRERGVVWEESIVMAPKNARFVFLSATVPNAKEFADWVAKVH
QQPCHIVYTDYRPTPLQHYLFPTGGDGLYLVVDEKGKFREDSFQKALNALVPANDGDKKK
DYGKKQKGLVNGRGGEDSDIFKMVKMIIQRQYDPVIIFSFSKRECEFLAMQMAKMDLNED
DEKVNIETIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEG
LIKCLFATETFSIGLNMPAKTVVFSNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDDRGV
CILMLDEKLEPSTAKMMVKGSADCLNSAFHLSYNMLLNQLRCEDGNPENLLRNSFYQFQA
DRAIPDLERQMKLLQEERDSIHIEEEDSLENYYSLLQQYRSLKNDVRDIVFSPRYCLPFL
QPGRLVCVRCGNNDENALPLSTEDNVTWGVIVNFQRLKGLSEDDANKSPEDANYSVDILT
RCAVSKDELSKKTIKIVPLKSPGEPVVVSVLVSQIDNLSSVRLIIAKDLLPLENRENTLK
KVSEVLSRFSKQGMPLLDPEEDMKVQSGSYRKAVRRIEALENLFDKHEVSKSPLIEQKLK
VLHKKKEITSQIKTIKKSMRSSSALAFKDELKARKRVLRRLGYVTREDVVELKGKVACEI
SSADELVLTELMFNGVFKDIKIEEMVSLLSCFVWQEKLQDAQKPREELDMLFTQLQDTAR
RVAKVQLECKVEIDVESFVNSFRPDIMEAVYSWAKGSKFYEIMEITQVFEGSLIRGIRRL
EEILQQLILAAKSIGEVELEAKFEDAVSQIKRDIVFAASLYL
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgggatcggtgaagaggaagtcgttagaagaaggtccttcagcttctacacctccgccg
cacaaacaacagaaagacaacaggaacaatgataacagattaataggaacaaacaatgag
gcggaggccggggtggcgtgtgttcatgattgttcatacccggagaactacgttgctgtt
cctcggcggtcaaataccgaggaagactcaaagcccgctaaggaatttccttttacactc
gacccttttcaggcggaggcaattaattgcttgaatgcaggagaatccgttatggtatca
gcacatacatcagcagggaaaactgttgtggcatcatatgctattgcaatgtcactgaag
aataagcaacgagtaatatacacttctcctataaaggcactgagtaaccaaaagtacaga
gagttcaaagaagagttttctgatgtggggttgatgactggagatgttactattgaaccc
aatgcttcttgcttggtaatgaccacagaaatctggcgtagtatgcagtacaaaggatca
gaactcacaagggaggtggcatggatcatttttgatgaggtacactatatgcgtgataga
gaaagaggggtagtttgggaagagagcattgttatggctcccaaaaatgctcgttttgtg
ttcctttctgctacagtcccaaatgctaaagaatttgctgattgggttgcaaaggttcat
cagcaaccatgtcatattgtttatacggattataggccaacacctcttcaacattacctt
tttcctactggtggtgatgggttgtatttggtggtggatgaaaagggaaaatttcgtgaa
gatagtttccaaaaagctttaaatgctcttgttcctgccaatgatggtgacaagaagaaa
gattatgggaagaagcagaaagggttggttaatggtagaggtggtgaagatagtgatata
tttaaaatggtgaagatgataattcaacgccaatatgatcctgttataatctttagtttc
agcaaaagggaatgtgaatttcttgcaatgcagatggcgaaaatggacttgaatgaggat
gatgagaaagtgaacatcgaaaccatcttttggagtgctatggacatgctatcagatgat
gacaaaaagctacctcaggtgtcaaatatgcttcccctcttgaagcgtgggattggtgtg
catcattctggcttactccccatactgaaggaagtcattgaaatactattccaagaaggt
ctaattaagtgtttgtttgccacagagacattcagcataggtctgaacatgcctgcaaaa
acagttgtcttctcaaatgtccggaagtttgatggagataaattcagatggctatcaagt
ggtgaatacatacagatgagtggtcgtgcaggacgtagaggaatagatgatcgtggtgtc
tgcattcttatgcttgatgaaaaactcgaaccttcaactgctaaaatgatggtcaaagga
agtgctgattgtttaaacagtgcttttcatttaagctacaatatgcttttgaatcaactg
agatgtgaagatggtaatccagaaaatttgcttaggaattcattctatcagttccaagct
gaccgagccatccctgatcttgagagacaaatgaagcttttacaggaggaaagggactcg
attcacattgaagaggaggatagcttggaaaactattactctctgctacagcagtataga
agcttaaagaatgatgttcgtgatattgtcttttctcctagatattgtttgccatttttg
cagcctggcaggcttgtttgtgttcgttgtggaaataatgacgaaaatgcccttcctttg
tcaaccgaggataacgtaacatggggtgtaattgtcaactttcaaaggttgaagggtctt
tcagaagatgatgcaaataaaagcccagaagatgcaaactattcagttgatattcttaca
agatgtgcagtttctaaggatgaactttcaaagaaaacaatcaagattgttccattaaaa
tcccctggggaacctgttgttgtttctgttcttgtttctcagatagataacttgagtagt
gttcgtcttataatcgcaaaggatcttttgccattagaaaatcgggaaaacaccttgaaa
aaggtatctgaagttctctccagattttccaaacaaggaatgccactgttggaccctgaa
gaagacatgaaggtccaaagtgggtcgtataggaaggctgttcgcaggattgaggcttta
gaaaacctgtttgataaacatgaagtttcaaagtctccacttattgagcaaaaactcaaa
gtgttgcacaaaaagaaagaaattacttctcaaattaaaacaatcaagaagtcaatgcgt
tcttcctctgcacttgccttcaaagatgagctcaaagcaaggaaaagggttcttcggaga
cttggatatgtaactagggaggatgttgtggagttgaaggggaaagttgcttgtgaaatt
agcagtgctgatgaactggtgttaacagagctcatgttcaatggggttttcaaagatata
aagatagaagaaatggtgtcccttttatcatgttttgtgtggcaagagaagcttcaggat
gctcaaaagcccagggaagaactggacatgcttttcacacagttgcaagatactgcacgc
agagttgcaaaagtgcagctagagtgcaaggttgaaattgatgtggagagttttgtaaat
tcattccggcctgatatcatggaggctgtttattcatgggcaaaagggtcaaaattctac
gagatcatggaaatcacacaggtgtttgaagggagtttgatcagagggatcaggaggctg
gaagaaatacttcagcagttgatacttgcagcaaaatccattggggaagttgaacttgaa
gccaagtttgaggatgcagtttcacagatcaagagagatattgtgtttgcagcctcacta
tatttgtag
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