Lactuca sativa (garden lettuce): 111878062
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Entry
111878062 CDS
T05352
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 5
KO
K05391
cyclic nucleotide gated channel, plant
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
111878062
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lsv04040
]
111878062
Ion channels [BR:
lsv04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
111878062
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Motif
Pfam:
Ion_trans
cNMP_binding
Ion_trans_2
IQ
Motif
Other DBs
NCBI-GeneID:
111878062
NCBI-ProteinID:
XP_023730346
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Position
8:complement(98096436..98100561)
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AA seq
734 aa
AA seq
DB search
MFDSGSKSQYVGGQREKFKRLDDLDSRTSSPASSVAMNKCGFEISRPKHTHATATPTRSF
KNGIRKGSEGLKSIGRSLGFGVSHAVFPEDLKVSEKKILDPQAKFLLMWNKFFVVSCIIA
VSIDPLFFYLPVFDQTKTCLGIDRKLAIIATTLRTVVDAFYLIHMALEFRTAYIAPSSRV
FGRGELVIDPAQIAKRYLKWYFIIDFLSVLPLPQIVIWRYLQRQRGSDVMATKEALLYIV
LIQYIPRFARFIPLTSELKRTAGVLAETAWAGAAYYLLLYMLASHIVGAFWYLLSAERVD
TCWQKACKASQHDKDLIYCGNEDMRGYDSWISNSTNILKEACSPDGDNPPFDFGIFNQAL
SSGIVSSTKFVQKYCYCLWWGLQNLSTLGQGLKTSTYPGETIFSIALAISGLILFALLIG
NMQTYLQSLTIRLEEMRIKRRDSEQWMHHRLLPDDLQERVRRYDQYKWLETRGVDEENLV
QTLPKDLRRDIKRHLCLALVKRVPLFENMDERLLDAICERLKPCLYTDSSYIVREGDPVD
EMLFIIRGRLESVTTDGGRSGFFNRSLLKEGDFCGEELLTWALDPKSGANLPSSTRTVKA
LREVEAFALPADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKI
LEQRRKEEEEEAELAARNSAVTGTPSYSLGATFLASKFAANALRGVQRNRNLRTARELVK
LQKPPEPDFTADAD
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacagcggatcaaagtcccaatatgttggtggccagagagagaagttcaagagg
ttagatgatttggattcaagaacatcatcacctgcttcttcagttgcaatgaacaaatgt
ggatttgaaataagccgaccaaaacacacacacgcaacagctactcccacaagatctttc
aaaaatggaatcagaaaaggatcagaaggacttaaatcaatcggtagatcactcggattc
ggtgtttctcatgctgtgttccctgaagatcttaaagtctctgaaaaaaagatccttgat
cctcaagccaaattccttctaatgtggaacaaattctttgttgtctcctgtattattgct
gtgtccatagacccacttttcttctaccttcctgtttttgatcaaaccaaaacttgcctt
ggtatagatcgaaagctagccattattgctacaactctaagaacagttgtcgatgcattt
tatcttattcacatggctcttgaattcagaactgcttacattgctccatcatctcgtgtt
tttggacgtggtgaacttgtaattgatcctgcccaaattgccaaaagatacttgaaatgg
tatttcatcattgatttcctttctgttcttcccctcccacagattgttatctggagatat
ttgcagaggcaaaggggttcagatgtaatggctacaaaagaagcgttactttatattgtg
ttgattcaatatatcccaagatttgctcgattcattcctttgacttcagaacttaaaagg
acagctggcgttcttgcagaaactgcttgggctggggctgcctattatttgttgctctac
atgcttgccagtcatatagtaggggcattttggtatttgttatcagcagagcgagttgat
acatgttggcagaaagcttgcaaagcaagtcaacatgataaggatttaatatactgtgga
aatgaagacatgcgtggatacgacagctggatcagtaacagcaccaatattttaaaagag
gcttgctcgccagatggcgataatccaccttttgattttggaatttttaaccaggctttg
tcttcgggaattgtctcatctacaaaatttgttcaaaaatactgctactgcttgtggtgg
ggcctacagaatttaagcactttaggacaggggcttaaaacaagcacttatcctggagag
acaatattttcgattgcattagctatctctgggctcattctatttgctttgttgattggt
aacatgcagacgtatcttcaatctcttacaatccgtcttgaggagatgaggatcaagagg
cgtgattcagagcagtggatgcatcatcggttgcttccagatgatttgcaggagcgagtc
agacgatatgatcaatacaaatggttagaaactcgtggtgtagatgaagagaatttggtt
caaactttaccaaaggatttgagaagagacataaagcgtcatctttgtcttgctttggtc
aaaagggttcctctgtttgagaacatggatgagaggcttctagacgcgatttgcgagcgt
ctaaaaccctgtttatacaccgacagcagttacatagtccgagaaggcgacccggtcgac
gaaatgctcttcatcatacgaggccgcctcgagagtgtcaccaccgacggcggaagaagc
ggctttttcaaccggagtttattaaaagaaggagatttctgcggcgaggagcttctcaca
tgggcactcgaccctaaatccggcgccaatctaccctcctccaccagaaccgtaaaggcg
ttaagagaagtagaagcttttgcactacccgccgacgaactgaaatttgtcgcgagtcag
ttccggcgacttcacagtcggcaggtacagcatactttccgattttattcgcagcagtgg
cggacgtgggcggcgtgctttattcaggcggcatggcggaggtattcgaagaggaagatt
ttggagcagcggcggaaggaggaagaagaggaggcggaattggcggcgcgtaacagtgcc
gttaccggtacgccgtcgtatagccttggggcgacgtttttggcttcgaaattcgcggcg
aatgcgcttcgtggggttcaacggaatcggaatttgaggactgcgagggaattggtgaaa
ttgcaaaagcctccggaaccggattttaccgctgatgctgattag
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