KEGG   Lactuca sativa (garden lettuce): 111878512
Entry
111878512         CDS       T05352                                 
Name
(RefSeq) protein transport protein SEC13 homolog A
  KO
K14004  protein transport protein SEC13
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03013  Nucleocytoplasmic transport
lsv04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    111878512
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    111878512
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lsv03019]
    111878512
   04131 Membrane trafficking [BR:lsv04131]
    111878512
Messenger RNA biogenesis [BR:lsv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     111878512
Membrane trafficking [BR:lsv04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    111878512
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    111878512
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    111878512
SSDB
Motif
Pfam: WD40 Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_WDHD1_1st WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd WD40_MABP1-WDR62_2nd WD40_Gbeta Beta-prop_WDR35_TULP_N Beta-prop_Vps41 Beta-prop_RIG_2nd ANAPC4_WD40 Beta-prop_EIPR1 WDR55 Beta-prop_TEP1_C Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR41 Beta-prop_WDR19_1st Beta-prop_WDR75_1st EIF3I Beta-prop_IFT122_1st Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd NBCH_WD40 WD40_RFWD3 Beta-prop_HPS5 Beta-prop_IFT140_1st
Other DBs
NCBI-GeneID: 111878512
NCBI-ProteinID: XP_023730791
LinkDB
Position
4:57062458..57065353
AA seq 301 aa
MPAQKIETGHTDTVHDVCMDYYGKRVASASSDSTIKIIGVTNNSTSQHLTTLTGHNGPVW
QVAWAHPKFGSLLASCSYDATIILWKETNPNEWTQVHTFTDHKSSVNSIAWAPHELGLCL
ACGSSDGNITVHTARSDGGWDTTRIDQAHPVGVTSVSWAPSMAPGALVGSGSFEPVQKLA
SGGCDNTVKVWKLSNGGWRMDCFPALQMHTDWVRGVAWAPNLGLPKSTIASCSEDGTVVI
WTVGKEGDNWNGKVLFDFKVPVWRVTWSLTGNLLAVAAGDNNVTMWKEAVDGEWQQVTTV
D
NT seq 906 nt   +upstreamnt  +downstreamnt
atgcctgcacaaaaaatcgaaacgggtcacacagacactgtccatgatgtgtgcatggac
tattacggaaaacgagtagcatctgcatcctccgattccaccatcaaaataatcggtgtc
accaacaactccacttcccaacacctcactactttaaccggtcacaacggtccagtctgg
caagtcgcgtgggcccacccaaagtttgggtccctcctagcatcctgttcctacgatgca
accatcatcctctggaaagaaaccaacccaaacgaatggacccaagtccacactttcacc
gaccataaatcctcggtcaactccattgcgtgggccccacatgagctcgggttatgtctg
gcgtgcgggtcgtccgacgggaacatcacggtccacaccgccaggtcagatggcgggtgg
gacaccacacggatcgaccaggctcacccggttggagtgacttcggtttcgtgggccccg
tcgatggctcccggggctttggtcgggtcgggtagttttgaaccggttcaaaagctggct
tctggggggtgcgataacacggtgaaggtatggaagttatcaaacgggggttggagaatg
gactgttttccggctttacaaatgcatacggattgggttcggggtgttgcgtgggccccg
aatttggggcttccgaaatcgactattgcaagttgttctgaggatgggactgttgtgata
tggactgtggggaaagaaggtgataattggaacgggaaggttttgtttgattttaaggtt
ccggtttggagggtaacttggtcattaaccggtaatcttttggctgtggctgctggggat
aataatgtcaccatgtggaaagaagctgttgatggagaatggcaacaggttaccaccgtt
gattag

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