Lactuca sativa (garden lettuce): 111878741
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Entry
111878741 CDS
T05352
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111878741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsv03041
]
111878741
03009 Ribosome biogenesis [BR:
lsv03009
]
111878741
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111878741
Spliceosome [BR:
lsv03041
]
Complex A
U1 snRNP components
U1 related factors
111878741
Complex B
111878741
Ribosome biogenesis [BR:
lsv03009
]
Eukaryotic type
Pre-60S particles
Helicases
111878741
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
DUF4436
Motif
Other DBs
NCBI-GeneID:
111878741
NCBI-ProteinID:
XP_023731014
LinkDB
All DBs
Position
5:350041857..350047303
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AA seq
568 aa
AA seq
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MSYVPPHLRKSVAATVTATATATTTTTTATPTNVDNITTNHKLNSKSNNNAFSNSTPRRS
SANNHIQPSRALAVPNVVLPQWKPSERVLRLKPEQIEEVRLRLNVDVTVTPDSPAAPAPI
ESFTDMCLASSIMKDIAIHEYTTPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMI
QHCIAQPPVRRGDGPLALVLAPTRELAQQIEKEVKAFSQSVESFRTAIVVGGTNIADQRS
ELRAGVEIVVATPGRFIDHLQQGNTSLTRISYVVLDEADRMLDMGFEPQIREVMHNLPEK
HQTLLFSATMPVEIEALAQEYLTNPVQVKVGKVSSPTENVSQTLEKISESEKIDRLLSLL
VEEAALAEKLGHPFPLTIVFVERKTRCDEVAEALVAQGLNAVALHGGRTQSEREGALRDF
RHGPTNILVATDVASRGLDVTGVAHVVNLDLPKTMEDYVHRIGRTGRAGSTGRATSFYTD
RDMFLVSQIRKAIADVQSGNTVAFATGKVARRKEREAAAAQKEARMAQSKLPATISSINV
EDKYKYMISPAPNAMIKNEGSADDAWDD
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgtcttatgtgcctcctcacctccgtaagtcagtcgccgccaccgtcaccgccacagcc
acagccaccaccaccaccacaaccgccacccccacaaacgtagataacatcaccacaaac
cacaaacttaactctaaatccaacaacaatgccttttctaattcaactcctagacggagc
tcagccaacaaccacatccaaccgtcgagagccctcgctgttcctaacgtagtgcttcct
caatggaagccttctgaacgcgttctacgtcttaaacctgagcagatagaagaggtcaga
ttacgactcaatgttgatgttactgtcacacctgactcccctgcagcacctgcaccaatt
gaatcctttacagatatgtgtctggcctcaagcatcatgaaggatattgctattcatgaa
tacacaacacctacttctatacaggctcaggcaatgcctgttgctctaagtggaagggat
cttttaggctgtgcagaaacaggcagtggcaaaactgctgctttcacaatacccatgata
cagcattgtatagctcagccacctgttcggaggggagatggtcctttagcactagtgctg
gctcctaccagagagcttgcacagcagatagagaaagaggtgaaagctttcagtcaatca
gtggagtctttcagaactgcaatcgttgtgggtggaacaaacattgctgaccagaggtct
gagctaagggcaggagtggaaattgtggttgctactcctggaagatttattgatcattta
caacagggaaacacatctctcacaaggatttcatatgttgttcttgatgaagcagataga
atgcttgacatgggttttgaacctcaaataagagaggtgatgcataatcttccagaaaag
catcagacactgttgttcagtgcaactatgccagtggagattgaagcattagcacaggaa
tatttgacaaatccagtacaagtgaaggttggaaaagtgagcagcccaacagagaatgta
tcccaaacattggagaagatttccgaaagtgaaaagattgatcggttgctatctttgctt
gttgaggaggctgcactggctgaaaagttaggccacccatttcccttaacaattgtattt
gttgaacggaagacaaggtgtgatgaagtagctgaagctttggtagctcagggtttaaat
gctgttgctcttcatggaggccgaactcagagcgaaagagagggtgcactccgtgatttt
agacatggtcccactaacatcttggttgctactgatgttgcctctcgtggtctagatgtt
acaggtgttgctcatgtagttaacctcgaccttccaaagacgatggaggactatgtgcac
cgaattggaaggacagggcgtgcaggatcaacaggaagagctacttcattctatacagac
cgtgatatgtttcttgtgtcacaaataaggaaagcaatagcagatgttcaatctggtaac
acagtagcttttgccactggcaaggttgcacgaaggaaggagagagaagcagcagcagca
cagaaagaggctcggatggcacaatcaaagctgccagcaacaatatcatccataaatgtg
gaagacaagtacaagtacatgatttccccggctcccaatgcaatgatcaagaatgagggt
tccgctgatgatgcgtgggacgattaa
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