Lactuca sativa (garden lettuce): 111878768
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Entry
111878768 CDS
T05352
Name
(RefSeq) uncharacterized protein LOC111878768
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111878768
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111878768
03400 DNA repair and recombination proteins [BR:
lsv03400
]
111878768
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
111878768
Messenger RNA biogenesis [BR:
lsv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
111878768
DNA repair and recombination proteins [BR:
lsv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
111878768
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HRDC
HTH_40
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
111878768
NCBI-ProteinID:
XP_023731041
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All DBs
Position
5:350883124..350889007
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AA seq
879 aa
AA seq
DB search
MEHTLKEYFGFSTFRPYQKEIIEKILEGRDSLVVMATGSGKSLCYQVPPLIAQKTAVVIS
PLISLMQDQVMALKERGIRAEHLSTAQTNTSAQKNAESGQYDLLYMTPEKACNAPNSFWS
RLLNTGICLVAVDEAHCISEWGHDFRVEYKQLYKLRDVLVGVPFVGLTATATEKVRNDIV
GSLMMKDPHVAIGSFDRKNLYYGVKSINRGASFVDELVAQVSKHVSNAGSTIVYCTTIKD
VQEIGRSLCEAGINAGMYHGQMGHKAREESHRSFIRDEVRVMVATIAFGMGIDKPDIRHV
IHYGCPKSLESYYQESGRCGRDGIASDCWLYFSRGDFGKADFYCGEASSENQKKAIMDSF
MAAQRYCMQTTCRRKILLEYFGEICPSINCGNCDNCTSLKEENDMSREAFLLMGCIQSCG
GYWGLNLPIDVLRGSRAKKITEKQFDNLPYHGLGKDFSANWWKTLGFQLISFGYLVETVK
DTYRTVSVSVEGAKFLRSCRPDHQPPLLLPITSELGGGNEDKISTDTPGSGIDGMSQAER
EVYKILLEERMKLARSAGTAPYAICGDLTLKKIVATRPSTKARLANIDGVNQHLVTRYGD
QIIRVIHELSKKLDLCLDGVASMEATQVCNNSKSHTTTIKNPKDLPPAKYSAWKMWQEDG
LTAEKIANFPGRSAPIKVGTVLGYVLDAAREGCAVDWGRFFNEIGLTQQIAANVKAAVFK
VGSKEKLKPIKDELPEEVEYFHIKAWLTMDELGMSTDAIPSPTPKQQFNGIQEKEESSPS
SKRHINPMQAVVVDIIDDDDDSPMKRQKLEEDNNTSHQPQPQLTEASLLEWLQNFQNGVT
LVDILKHFNGSTGAAVLDLLSCMESEFLIFQKNNVYKIM
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atggaacatactctcaaggaatattttgggttttcgacatttcgaccgtatcagaaggag
ataatcgagaagattttggagggaagagatagcttggttgttatggctaccggtagcggc
aagtccctatgctatcaagttcctccattaattgcacaaaagactgctgtagttataagc
ccacttatttctctgatgcaagatcaggtcatggctttgaaagagaggggcattagagct
gagcatctctccactgctcagaccaacacaagtgcacagaagaatgctgagagtggccaa
tatgaccttctgtatatgactccagagaaggcatgtaatgctcccaacagcttctggtca
aggttgcttaacacaggaatatgtctagtggctgttgatgaagcccattgtatctcggag
tggggccatgattttcgggtggaatacaaacaattatacaagctgcgagatgttttggta
ggtgttccatttgttggattgacagcaacagctacagaaaaggttcgaaatgacatagtt
ggttctcttatgatgaaagaccctcatgttgccattggatcatttgatagaaaaaacctt
tactatggtgtgaaatctatcaaccgtggggcctcatttgttgatgagcttgtggcacaa
gtctctaaacatgtatcaaatgctggatcaactattgtatattgtacaaccattaaagat
gtccaagagattggtagatcactttgtgaggctggaatcaatgctggaatgtatcatggc
caaatgggtcacaaggcccgtgaagaatcacacagatcttttataagggatgaggttcgg
gtaatggttgcaactattgcatttggaatgggtattgataagccagacataagacatgtg
atccactatgggtgccctaagagtttggagtcatattatcaagaaagtggaagatgtggt
agagatgggattgcttctgattgctggctatacttttcaagaggtgactttggaaaagct
gatttctactgtggagaagcaagctcagaaaaccagaaaaaagctattatggattcgttt
atggctgctcaacgatattgcatgcagacaacttgcagaagaaaaattttgctcgagtat
tttggggaaatatgtccatccattaattgtggaaattgtgataattgcacaagcttaaag
gaggagaatgatatgtctagagaagcatttcttctgatgggttgcatccagtcttgtggt
ggttattgggggcttaacttgccaatagatgttcttcggggttctcgtgctaaaaagatt
actgaaaagcagtttgacaatctcccataccatggacttgggaaagatttttcagcaaat
tggtggaagacactaggttttcaactaatttcttttggttacttggttgagactgttaaa
gatacttatagaactgtaagtgtgagtgtggaaggtgcaaagttccttagatcctgtagg
cctgatcaccaacctccattacttttaccaattactagtgaattgggtggtggcaatgag
gacaagataagtacagatacacctggctcagggattgatggaatgtcacaggcggagaga
gaagtttataaaatacttttagaagagagaatgaagcttgcaagatctgctggaactgct
ccatatgctatatgtggggatttaaccctgaaaaagatagtagcaacaagaccatctact
aaagcaaggttggcaaacattgatggtgtcaaccagcaccttgtaacaaggtatggggat
caaattattcgggtgatccatgaattatcgaaaaaactggatctttgtttggatggagtt
gcatccatggaagccactcaagtttgtaacaactccaaatctcataccaccacaataaaa
aacccaaaagatttgccacctgcaaaatacagtgcttggaagatgtggcaagaggatggt
ctcacagctgaaaaaattgctaactttcctggtagatcggccccaataaaagtaggaaca
gtccttggatatgttctagatgcagcacgagaaggatgtgcggttgactgggggagattt
tttaatgaaattggactgacacagcagattgctgctaatgtcaaagctgcagttttcaaa
gttggctccaaagaaaaactcaaacctatcaaagacgagctaccagaagaggtagagtat
tttcatatcaaggcatggttgacaatggatgaacttgggatgtcaactgatgctattcca
tctcccactcccaaacaacaatttaatggaatacaagaaaaagaagaatcatccccatca
agtaaaagacacattaatcctatgcaagctgtagttgttgatattattgatgatgatgat
gattctcccatgaaacgccagaagcttgaagaagataataatacttctcatcagcctcag
cctcagcttactgaagcttcccttttggagtggcttcaaaactttcagaatggggtcacg
ttggtggacatattgaagcatttcaatgggtctacaggggcggctgttcttgatctgctg
agttgcatggagagtgagtttttaatctttcagaagaacaatgtctataaaattatgtga
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