Lactuca sativa (garden lettuce): 111878838 Help Entry 111878838         CDS       T05352                                  Name (RefSeq) E3 ubiquitin-protein ligase COP1   KO K10143   E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27] Organism lsv  Lactuca sativa (garden lettuce) Pathway lsv04120   Ubiquitin mediated proteolysis lsv04712   Circadian rhythm - plant Brite KEGG Orthology (KO) [BR:lsv00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     111878838  09150 Organismal Systems   09159 Environmental adaptation    04712 Circadian rhythm - plant     111878838  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04121 Ubiquitin system [BR:lsv04121]     111878838 Enzymes [BR:lsv01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      111878838 Ubiquitin system [BR:lsv04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    Other single Ring-finger type E3     111878838   Multi subunit type E3    Cul4 complex     Target recognizing subunit (DCAF)      111878838 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd WDR55 Beta-prop_EIPR1 Beta-prop_WDR19_1st WD40_MABP1-WDR62_2nd zf-C3HC4_2 Beta-prop_EML EIF3I zf-C3HC4 Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st WD40_RFWD3 WD40_like zf-C3HC4_3 zf-RING_2 Beta-prop_WDR75_1st zf-RING_UBOX U-box Beta-prop_WDR35_TULP_N zf-C3HC4_4 zf-RING_5 Beta-prop_DCAF12 Beta-prop_SCAP WDR90_beta-prop_4th RING_XB3-XBAT31 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Prok-RING_4 zf-RING_10 YbfN zf-rbx1 Motif Other DBs NCBI-GeneID:  111878838 NCBI-ProteinID:  XP_023731094 LinkDB All DBs Position 5:274856700..274860596 Genome browser AA seq 652 aa AA seqDB search MEEGSMGALVPAVKSEVNTGSSHALQSGSGDMYTVEGGRGSETTDREFLCPICMQIIKDA FLTSCGHSFCYMCIITHLDNKNDCPSCASSLTTNQLFPNFLLNKLLKKTSASQASKTASP LEQFRQALLQGYEVSVKELDTLLSLLSEKKRKLEQEEAEKNMQNLVEFLQCLRKKKIDEL SEVQNDVKYIKEDISLVERHRIELYRARDRYSVKMPIHGELTGSKSWSSSSINRDNLLVP SGKSQGIQIKEASSGLSSQHTTSQSSLAVTRKKRVQSQFNDLQQCYLQKRRQVANPLQNL DKRDADSSQREGYSSGLSDFQSVLSTFTQYSRLRVIAELRHGEHFHSANIVSSIEFDRDD ELFATAGVSRRIKIFDFSTIVNEPPEVHCPVVEMPTRSKLSCLSWNKHTKNHIASSDYEG IVTIWDVNTRQSVMEYEEHEKRVWSVDFSKMDSSMLVSGSDDCKVKIWCTKQESSAINIE MKANICCVKYNPGSSNHIAVGSADHHIHYYDLRNTSQPLHIFRGHQKTVSYVKFLSNAEL ASASTDSTLRLWDVTRNIPVRTLRGHTNEKNFVGLSVNHDFLACGSETNEVYAYHKAISK PLTWHRFGAPNVEDSDEDGGSYFISAVCWKNDSPTMLAANSLGTIKVLVLAP NT seq 1959 nt NT seq  +upstreamnt  +downstreamnt atggaggagggatcgatgggagctttggtgccggcggtgaagtccgaagtaaacacaggg tcatcccatgctttacagtccgggtccggcgacatgtacaccgtcgaaggaggaagagga tcggaaacgacggatagggagtttttatgtccgatttgtatgcagataataaaggacgcg tttctgacgtcttgtggacatagcttctgctacatgtgtatcatcactcatcttgacaat aagaacgattgccctagttgcgcttcttcactcaccaccaaccagctcttccctaatttc ctacttaacaagctattgaagaagacttctgcatcccaagcatcaaaaactgcctcccca ttggaacaatttcgccaggcattactccagggttatgaagtatcagtaaaggaactcgat acactgctgtcgcttctctctgagaagaaaagaaaattggagcaagaagaagctgagaaa aacatgcaaaatcttgttgagttcctccagtgcttaaggaaaaagaaaattgacgaactt tctgaggtgcaaaatgatgtcaagtatatcaaagaggatattagcttggtggagagacat agaatcgaattatatagagctagagataggtattcagtgaaaatgccaatacatggtgaa ttaacaggatcaaaatcatggtcttcttcatcaataaatagagacaatctcttagttcct tctgggaaatcacaaggtatccagatcaaagaagcttccagtggattgagttcgcaacac acaacaagccaatcgagtcttgctgttacacgaaaaaaacgtgttcaatctcagtttaat gacctgcaacaatgttacttgcaaaaaagaagacaagtagcaaatccgttacagaatctt gataaaagggatgctgattcttcacaaagagaaggttatagttcaggcctatcagatttt caatctgtactttctacttttacacaatacagtcgattaagggtgattgcagaactcagg catggtgagcactttcattcagccaacattgtatccagcattgagtttgatcgtgatgat gagttgtttgctactgctggagtttcaaggcgtataaagatttttgacttttcaacaatt gtgaatgaacctccagaagtacattgccctgttgtggagatgccaacaagatcaaaactt agttgcttaagctggaacaagcatacaaagaatcatatagctagtagtgattatgaagga atagtaactatctgggatgtgaacacacgacagagtgtgatggagtacgaagaacacgaa aaacgtgtctggagtgtcgatttctcaaagatggattcatcaatgcttgtatccggtagt gatgactgtaaggtaaaaatatggtgcacaaagcaagaatcaagcgctatcaacatcgag atgaaagcaaatatatgttgtgtcaagtacaacccggggtccagcaatcacattgcggtg gggtcagcagaccatcatatccattactatgatttaaggaacacaagtcaacctcttcat atctttcgtggccaccaaaaaacagtttcatatgtaaagtttctgtcaaatgctgagctg gcatctgcatcgactgacagtactctgcgcttatgggatgtgacacgaaacattcccgtt cggacattgagaggtcacacaaatgagaaaaactttgtgggtctttctgtaaaccatgac tttcttgcttgtgggagtgaaactaatgaagtatatgcgtaccataaggcgatatcaaag ccgctgacgtggcatagatttggggcacctaatgtggaggatagtgatgaagatggaggg tcttattttattagtgctgtatgttggaagaatgatagtccaaccatgttggctgctaat agtctgggtactataaaagttttggtgcttgcaccctag

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