Lactuca sativa (garden lettuce): 111878944
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Entry
111878944 CDS
T05352
Name
(RefSeq) flowering time control protein FY
KO
K15542
polyadenylation factor subunit 2
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111878944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111878944
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111878944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WD40_Gbeta
EIF3I
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
Beta-prop_Aladin
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_WDR41
Beta-prop_IFT122_1st
eIF2A
Beta-prop_WDR35_TULP_N
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_SPT8
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_SCAP
NBCH_WD40
Beta-prop_Vps41
Beta-prop_HPS5
Tricorn_2nd
WD40_like
WD_LRWD1
PROPPIN
WDR54
Motif
Other DBs
NCBI-GeneID:
111878944
NCBI-ProteinID:
XP_023731198
LinkDB
All DBs
Position
1:192198482..192208022
Genome browser
AA seq
723 aa
AA seq
DB search
MMYNDPQQQQQQQQQPPPMYQQHPPPPPPQQQMMQQHPHHQHHHQQPPPHQFHQPQQMGE
FQRGPPQQQHQQPPPPPQMMRQPSASSTTLGGPPEYHQQLNHPPFDDNFAAKRMRKIGQR
RAVDYTSTVVRYMQTRLWQRDSRDRTVLQPTPAAAIDMLPTVAYSDNPSTSFASKFVHTS
LNKNRCSINRVLWTPTGRRLITGSHSGEFTLWNGQSFNFEMILQAHDQPIRSMVWSYNDN
WMVTGDDGGSIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR
CQEERSLSGHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAKSGKELCSFHGHKNTVLCVK
WNQNGNWVLTASKDQIIKLYDIRAMKELQSFRGHRKDVTALAWHPFHEEYFVSGSFDGSI
YHWLVGHETPQVEIQNAHDSCVWDLAWHPIGYLLCSGSSDNTTKFWSRNRPGDPARDKFN
VGHNQGFNEQNPAHGGRMAVNFAGPEPPTTPGPFGGLNRNEGTIPGIGIAMPLSLDTSSD
QKPPISSSMPPPLPPGPHPSLFVNQQQQQPPQHHHHHQPPHQQQMTSLPPPNMQPLQHPS
HMPLLPHPHLPRPPPQLPPHNMPGNLQSPIMHGQMGAMNQMGPPMQQGHFMGMNPMQQGP
PSGGGGGTQMYSSGATFNRPPMPGLGPYQPGNPSGGGMGTVPPNFGMPPPLPPGPPPHGQ
TPQ
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgatgtacaatgatcctcagcaacaacagcaacaacaacaacaaccaccaccaatgtat
cagcaacacccaccaccaccgcctccgcaacagcaaatgatgcagcagcacccacatcac
cagcaccaccaccaacagccgccgccacatcaattccaccagccgcaacaaatgggagag
tttcagaggggtccgccgcaacagcagcatcagcaaccgccaccgccaccgcagatgatg
cgtcagccttctgcttcttccacaactcttggtggtcctccagagtatcaccaacagctt
aatcacccccctttcgacgataactttgctgctaaaagaatgagaaaaattggacaacga
agagctgttgattatacaagtactgttgtgcgatatatgcagacacgtttatggcaacga
gattcacgtgacagaacagtattacaaccaacccctgctgcagcaatcgatatgttacca
acagttgcctattcagataatccatcaaccagctttgcatccaagtttgttcatacatca
ctcaacaaaaaccgctgctcaatcaatcgtgtgctgtggacgcctacaggtaggcgactt
ataacaggttcacacagtggagaattcactttatggaatggtcaatctttcaattttgaa
atgattcttcaggctcatgatcaaccaatcaggtctatggtatggagttacaatgacaat
tggatggttactggtgatgatggaggctctataaagtattggcaaaacaacatgaacaat
gtaaaggccaataaatctgcacataaggaatctgttcgtgatctaagcttttgtagaaca
gatttaaagttctgttcttgctctgatgacacaactgttaaagtttgggactttgctcgt
tgccaagaagaacgttctttatccggccatggttgggatgtgaagagtgttgactggcac
cctaccaagtctttactagtttctggtgggaaagataatcttgtgaagctttgggatgct
aaatcagggaaagagctatgttcatttcatgggcacaagaatactgttctttgtgtcaaa
tggaatcaaaatggtaattgggtgttaactgcttctaaggatcaaataatcaagctatat
gacattagggctatgaaagagctgcaatcttttcgtggtcatcggaaagatgtcactgct
ctggcttggcatccattccatgaggagtattttgtgagtgggagttttgatggatcaatc
tatcactggctagtggggcatgaaactccacaagtggaaattcaaaatgcacacgatagc
tgtgtgtgggacctcgcgtggcatcccattgggtatctcctttgcagtggaagcagtgat
aatactacaaaattttggtctagaaataggcctggggatccagctcgtgataaattcaat
gtgggtcataatcaaggtttcaacgaacaaaatcctgctcatggtgggcgtatggcagtc
aattttgcgggacccgaaccaccaacaactccgggaccatttggtggattaaaccggaat
gaaggaaccatccccggaatcggaatcgcaatgccattatctctagacacatcatcagac
caaaaaccacccatatcatcctcaatgccaccgccattgccgccaggtccccacccatct
cttttcgtcaatcaacaacaacaacaaccaccccaacaccaccaccaccaccaaccacca
catcaacaacaaatgacatccttacccccaccaaatatgcaaccgcttcaacatcctagc
catatgccgctccttccacatcctcatttgccccgccccccgccccaattgccgccacat
aacatgcccggaaatttacagtctccaatcatgcatggtcaaatgggagcaatgaatcag
atgggtcccccgatgcagcaaggccatttcatgggcatgaatcctatgcagcaaggccca
ccgagtgggggtgggggtgggacccagatgtattcatcaggggctacatttaatcgcccc
ccaatgccagggctaggtccttatcagcctgggaatccaagtggtggcggaatgggaaca
gtgccaccgaatttcggtatgcctccgccactgccgcctggcccaccgccacatggacaa
acacctcagtag
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integrated database retrieval system
