Lactuca sativa (garden lettuce): 111879004
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Entry
111879004 CDS
T05352
Name
(RefSeq) zinc finger CCCH domain-containing protein 40
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111879004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsv03041
]
111879004
Spliceosome [BR:
lsv03041
]
Complex B
Other components
Prp19-related factors
111879004
Complex C
111879004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
RRM_YTH1
RRM_occluded
zf-CCCH_3
zf-CCCH_10
zf-CCCH
zf-CCCH_4
zf-CCCH_PARP12
RRM_3
Motif
Other DBs
NCBI-GeneID:
111879004
NCBI-ProteinID:
XP_023731240
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All DBs
Position
9:219730023..219733198
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AA seq
473 aa
AA seq
DB search
MAHRILRDVEADGWERSDFPIICESCLGDNPYIRMTKANYDKECKICTRPFTVFRWRPGR
DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFAE
EHDRRARAGLDYESSYGKERPSDTILKLQRTTPYYKRNRAHICSFFIRGECTRGAECPYR
HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYIGGLDARVT
EQDLRDSFYTHGEIESVKIVSQRACAFITYTTRKGAENAANELSNKLVIKGLRLKLMWGR
PQAPKLDSGEALPNEARHVDHAGLVPRAVVSQIQPPGQDHQMPPPPMHYFNIPLPSDHHG
RAFYPSMDPQRMGAVIRSQDGSGGSGSGENINRASSGGGPQYAAYPPPPPPPQGGGGGRY
YQQYYPPPPYGYGPPPPVPGPYQQYPPQSHPSAMPPPGQGGVPAAAGGPPPQQ
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggcacatagaatattaagagatgttgaagctgatggctgggaacgctctgacttccca
atcatatgtgaatcatgcctaggtgacaatccttacattcgaatgacaaaagcaaattat
gataaagaatgcaaaatctgcacaagacccttcacagtcttcagatggagacctggtagg
gatgcaagatacaagaaaagtgagatttgtcaaacttgtagcaaattaaaaaatgtttgt
caagtgtgtctattagatcttgaatacggtttgccagttcaagttcgcgatactgcacta
agtatcaactcaaatgattcgattccaaagagtgatgtgaatagggaatactttgcagaa
gaacatgatcgtagggctagagcgggtttggattatgagtcttcgtatgggaaagaaagg
ccaagtgatactattttgaaactgcaaaggacaacaccatattataagagaaatcgagca
catatttgcagtttctttattcgaggtgaatgtacaagaggtgctgaatgcccttacaga
catgagatgcctgaaactggcgagttatctcagcagaatatcaaagatcgttactatgga
gttaacgatccggttgcattaaaactactaaacaaagcgggtgaaatgccgtcactcgaa
cccccagaagacgaaagcattcgaacactatacataggcggcctcgatgcaagagtcacc
gaacaagacctccgggacagtttctacacacacggtgaaatcgaatccgtcaaaattgtc
tcgcaacgtgcatgtgcgtttatcacgtacaccacacgcaaaggagctgaaaacgcggcc
aatgaactttcaaacaaacttgtcatcaaaggcctccggttaaaactcatgtggggccga
ccacaagcaccgaaactagacagtggtgaagcgctcccgaatgaagcccgacatgtggat
catgccgggctggtaccccgtgcggttgtatcgcagatacaaccgcccggtcaggaccac
caaatgccaccgccgccgatgcattattttaacatcccgctgccatcggaccaccatgga
cgggcgttttacccgtccatggatcctcagaggatgggggcggtgattcggagtcaagat
ggaagtgggggtagtgggtcgggtgaaaatataaatcgtgcttcaagtggtggtggtcca
cagtatgctgcatatccgccaccaccgcctcctcctcaaggtggtggtggtggacgatat
tatcagcagtattatccaccgccaccgtatggttatggaccaccaccaccagttccggga
ccgtatcaacaataccctccacagtctcatccgtccgcaatgccaccaccaggacaaggt
ggtgttccggcggctgcaggagggccgcctccacaacaatga
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