Lactuca sativa (garden lettuce): 111879393
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Entry
111879393 CDS
T05352
Name
(RefSeq) ABC transporter A family member 1 isoform X1
KO
K05643
ATP-binding cassette, subfamily A (ABC1), member 3
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
111879393
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lsv02000
]
111879393
Transporters [BR:
lsv02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
111879393
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
ACT_13
R1_ABCA1
AAA_29
RsgA_GTPase
ABC2_membrane
Motif
Other DBs
NCBI-GeneID:
111879393
NCBI-ProteinID:
XP_023731604
LinkDB
All DBs
Position
9:33527078..33538876
Genome browser
AA seq
1895 aa
AA seq
DB search
MEERKKEKKMTSSSGRQLKAMLRKNWLLKIRHPYITLAEILLPLVVMLMLIAVRTQVDTT
IHPAQSYIQKDTFVEVGKSSISPTFDQVLESLLANGEYLAFAPNTSDTRMMINILSYKFP
LMQLVTKIYEDELEIETYLKSDLYAACSEVKNCSNPKIRGAIVFHGQGPYLYDYSIRLNH
TWAFSGFPDIKSIMDINGPYVNDLELGLNQIPILQYGYSGFLTLQQVMDSFIIFYAQRKV
ANVASEDTMDNSKLLLSKYIVPNSLKIPWSQFTPATIRLAPFPTREYTDDEFQSIIKDVM
GVLYLLGFLFPISRLISYSVFEKEQKIKEGLYMMGLKDEIFHLSWFITYALQFAISSGII
TVCTMGTLFKYSDKSLVFMYFFVFGLSAIMLSFLISTFFTRAKSAVAVGTLAFLGAFFPY
YTVNDEAVSMVLKILASLLSPTAFALGSVNFADYERAHVGLRWSNIWRASSGVCFLICLV
MMVFDSLLYFAIGLYLDKVLHKENGVVYPWNFIFPKGFWRKRNTSKQYGSGLDVNNDNKE
KGTSSRSTMEAINLEMKQQELDGRCIQIRNLHKVYNSNKGKCCAVDSLQLTLYENQILAL
LGHNGAGKSTTISILVGLLAPTSGDALIFGKSILTDMDDIRKNLGVCPQYDILFPELTVK
EHLEIFANIKGVSEESLESSVTEMVDEVGLADKLNTSVSSLSGGMKRKLSLGIALIGDSK
VVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEADVLGDRIAIMANGSLKCC
GSSLFLKHQYGVGYTLTLVKTSPGASTAADIVYRHIPSATCVSEVGTEVSFKLPLVTSAS
FEHMFREIESCISKSSEHENQTDFGIESYGISVTTLEEVFLRVAGCDISEEEECLEGNTL
VMPDSIPSQPCDDYVEVEDKRSHSKFFGNYIMILGLMLSGVGRACTLFITAALSFLKLVT
VPCCCPSAITRSTFWKHSKALLIKRRISARRDRKTIVFQLLIPAIFLFIGLLLLELKPHP
DQPSITFTTSNFNPLLSGEGGGGPIPFDLSLPIAKQVSHYIEGGWIQKFQESTYTFPDPS
KVLQDAIEAAGPTLGPKLLSMSEYLMSSFNESYESRYGAIVMDPQNDDGSIGYSVLHNST
CQHAAPTFINLMNAAILRLATHNENMTIQTRNHPLPMTESQRLQRQDLDAFSAAIVVSIA
FSFIPASFAVAIVKEREVKAKHQQLISGVSILSYWVSTYIWDFISFLVPSSFAMLLFYIF
GLEQFIGSGAVFPTVLILLEYGFATASSTYCLTFFFSEHSMAQNVVLLVHFFTGIVLMVI
SFIMGLIPATQDMNSVLKNFFRLSPGFCFADGLASLALLRQGMKIGSSEGYFGWNVTGGS
ICYLAAEGVIYFLLTLGLEYFPPHEFNVFGIKDLIRSFRRSSPTDEFCEPLLRSSTESLA
IDLEEDIDVQTERNRVLSGSIDKAIIYLRNLRKVFPGGRNQGKKVAVNSLTFSVQEGECF
GFLGTNGAGKTTTLSMLSGELYPSDGTAFIFGQDMRLNPKAARQLIGYCPQFDALLEFLT
VQEHLELYARIKGVPEYMLENVVMDKLLEFDLLRHASKQSFTLSGGNKRKLSVAIAMIGD
PPIVFLDEPSTGMDPIAKRFMWEVISRLSTRSGKTAVILTTHSMNEAQALCTRIGIMVGG
KLRCIGSPQHLKTRFGNHLELEVKPTEVKSGDLENLCQMIQERLFDVPLHPRGIFGDLEV
CIRGDDSITSEDASATEISLSKEMIILIGRWLGNEERIRSLTDNVVGSGTAFNEQLPEQL
ARDGGLPLPIFSEWWLAKEKFSMIDSFVLASFPGATSQGSNGLSVKYQLPRGEDFSLADV
FGLIERNRNRLGIAEYSISQSTLETIFSHFAAANS
NT seq
5688 nt
NT seq
+upstream
nt +downstream
nt
atggaggaacgaaaaaaggagaagaagatgactagtagttcagggaggcaactgaaggcc
atgcttcggaagaattggcttctcaaaattcgtcatccgtatatcacacttgccgagatt
ctacttcctttggtggtgatgctgatgctaatagccgtaaggacacaagttgatacaaca
atccatcctgctcaatcgtacattcagaaagatacatttgtggaagttgggaagagcagt
atatccccaacttttgatcaagttttggaatcattgttggccaatggtgaatatctggct
tttgcacctaacacgagtgatacaaggatgatgattaacattttgtcatataaatttccc
ttaatgcagctggttaccaaaatatatgaagatgaattagagatcgagacctatttaaag
tcagatctctatgctgcttgcagtgaagtaaagaactgttcaaatccaaaaatcagagga
gcaatagtgtttcatggtcaaggtccttatttatatgattatagcattcggctcaaccac
acatgggctttttcaggatttccagatattaaaagcatcatggatataaatggtccttat
gtcaatgacttggaattaggcctcaatcagataccaattctgcagtatggttacagcggg
tttctaactctccaacaagtcatggattcatttattattttttatgcacaacgaaaggtg
gctaatgtagcaagtgaagataccatggacaacagtaagttgctgttgtccaaatatatt
gtgcctaactcactcaagataccatggagtcaattcacaccagcaaccataaggctagct
ccatttccaactcgtgaatatactgatgatgagttccagtccattatcaaagatgtcatg
ggagtcctgtacttattggggtttctttttccaatctctcgcctaatcagctattcagtt
tttgagaaggagcagaaaataaaggaagggctctacatgatgggactgaaggatgagata
ttccatctttcttggtttattacatatgctttgcagtttgcaatttcatcaggaatcatt
actgtctgtacaatgggcacgttgtttaagtacagtgataagtcattggtattcatgtat
ttctttgtgtttggactgagtgcaataatgctatccttcctgatctctactttcttcaca
cgagcaaaatcagctgtggcagttggaactcttgctttccttggagccttctttccttac
tatacagtcaatgacgaagctgtttcaatggttttaaagatattggcttctttgctttca
cctacagcatttgctttagggtcagtcaattttgctgattatgagcgtgcacacgttgga
ctccgttggagcaacatttggagggcatcttctggagtgtgctttctaatctgtctcgta
atgatggtgttcgattctttattgtactttgcaattggcctctatctggataaggttctt
cataaggagaatggagtggtgtacccatggaacttcatcttcccaaaaggcttttggaga
aagagaaatacaagtaaacaatatggttccggtttagacgttaacaatgataataaagag
aagggcacttcttctcggtcaacaatggaagcgataaacttagaaatgaagcagcaagag
ttggatggcagatgcatccaaattaggaatctgcacaaggtgtataatagcaacaagggg
aagtgttgtgctgttgattctttacagcttacattatatgaaaaccaaatacttgcactt
ctaggacacaatggtgctggaaagagcacaacaatttccatacttgttggccttcttgct
cctacttctggggatgccttgatttttggaaaaagtatcttaacagacatggatgacata
agaaagaatttaggtgtttgcccacaatatgacattctcttcccagaattgacggtgaag
gaacatttggaaatctttgctaatataaagggagtaagcgaggaatctttggagagcagt
gtgactgaaatggttgatgaggtgggattggcagataaacttaatacttctgtaagttct
ctttctggaggcatgaaaaggaagttgtcccttggcatagctttgattggagacagcaag
gttgttattcttgatgaaccaactagtggaatggatccatattcaatgcgattgacatgg
cagcttattaaaaaaatcaagaaaggcaggattatactactaacaacacactcgatggat
gaagcagatgtacttggagaccgaatagctattatggcaaatggttctttgaaatgctgc
ggaagttccctcttcttgaagcaccagtatggggttggctatactcttactttggtgaag
acttcacctggggcctccacagctgctgatattgtctacagacatattccatcagcaaca
tgcgtgagcgaagttggcactgaggtttccttcaagcttcctctagtaacctctgcttca
ttcgaacacatgtttagagaaattgaaagctgcatatcaaaaagctcggagcatgaaaac
caaacagattttggtatcgagagttatggaatatctgtgacaaccttagaggaggttttc
ttgagagttgcaggatgtgacatcagcgaagaagaggagtgccttgagggaaatactcta
gttatgcctgattccattccttctcaaccctgtgatgattatgttgaagttgaagataaa
agatcacattccaaattttttggcaattatataatgatcttagggctaatgctctctgga
gttgggagagcctgtactcttttcatcactgcagccttgagttttttaaagcttgttact
gtgccatgctgttgcccttctgccattacaagatcaacattctggaaacattccaaagca
ttgctcataaagagaaggatatctgctcgaagagaccgaaagacaattgtttttcagctc
ttaatccctgctatcttcttgtttattggtcttctcctccttgaactaaagccacatcct
gatcaaccctccataaccttcacaacttccaactttaatccactacttagtggtgaaggt
ggtggtggtcccattccttttgatctatcattgcctattgctaaacaggtttcacactat
atagaagggggttggattcaaaagtttcaagaaagcacatacacatttcctgatcctagt
aaggtattacaagatgctattgaggcagcagggcctactttggggccaaaactgctttcc
atgagtgaatacttgatgtccagcttcaatgaatcttatgagtcaagatatggggccatt
gtgatggatcctcagaatgatgatggtagtatagggtattcggttcttcacaacagcact
tgtcagcatgctgctccaacctttatcaatttaatgaatgctgctattcttaggcttgct
acacataatgagaatatgaccatacaaacacgtaatcatccacttccaatgacagaaagt
caacgcctgcaacgtcaagacttggatgcattctctgcagctattgttgtgagtattgcc
ttctctttcattcctgcttcgtttgctgtcgctattgtgaaggagcgtgaagtaaaagca
aaacatcaacaactgattagtggggtatctatattgtcgtattgggtgtcaacatatata
tgggacttcataagtttcttagtcccttcctcatttgcaatgcttctcttttacatcttt
ggcttagaacagttcattggcagtggtgctgtattccctacagtcctcattctgttggaa
tatggttttgcaactgcatcttcaacatattgcctaacctttttcttttcagaacacagt
atggcacagaacgtagtactgttggtccattttttcacggggattgttcttatggtcata
tcgttcattatgggattaataccagcaactcaagacatgaattctgttctcaagaatttc
ttcagattgtctccaggattttgctttgctgatggactagcttcactagctctgttacgc
caaggaatgaaaatcgggtcaagtgagggatattttgggtggaatgtcaccggtggatct
atttgttatctggccgctgagggtgtcatttatttccttctaacacttgggctcgaatat
ttccctccccacgaattcaatgtatttgggataaaggacttgataagaagtttcagaaga
agcagtcccactgatgaattttgtgaaccccttctgagatcttccacagaaagtttagct
attgatcttgaagaagatatagatgtccaaaccgaaagaaatagggttctttctggttcc
attgataaagctatcatctacctgcgtaatctgcgcaaggtattccctggagggaggaat
cagggtaagaaagttgcggtcaattcattgactttctcagttcaagaaggtgaatgtttt
ggttttttggggacaaatggagctgggaagaccactactttgtctatgctatcaggagaa
ttatatccaagtgatggaactgcattcattttcggtcaagatatgcgattaaaccccaaa
gctgctcgccaacttattgggtattgtccacaatttgatgcacttttagaatttctgact
gtccaagaacaccttgagctctatgcaagaatcaaaggtgtcccagagtacatgcttgaa
aatgttgtgatggataagttattagagtttgacttgttaaggcatgcttcgaaacaatca
ttcaccttaagtgggggtaacaaacgcaagttatctgttgcaattgcaatgattggagat
cctcctattgtgttcttagatgagccttctacaggaatggatcctatagcaaaacggttt
atgtgggaagttatatctcgtctatcaaccagaagcggaaaaacagcagttattttaact
actcacagcatgaatgaagctcaagcactctgcacaagaattggaatcatggttggagga
aagctaaggtgtattggcagtccacagcatctaaaaacacgatttggaaaccatctggaa
cttgaggtgaagccaactgaagtaaagtcaggggacttggaaaatctttgtcaaatgatt
caagaaaggctgtttgacgttcctttacatccgaggggcatatttggtgatcttgaagtt
tgtattagaggagatgactccataacgtcagaagatgcttcggccactgagattagtttg
tcaaaagagatgataatcttgattggacggtggcttggaaatgaagagaggataagaagt
cttacagataacgttgtcggctctggtactgctttcaacgaacagttacccgagcaatta
gcccgtgatggtggtctcccgctaccaatattctcagaatggtggttagcaaaagagaaa
ttctcaatgatagattcctttgttttagcttcatttcctggtgctacatctcagggttcc
aatggattgagtgttaaatatcagttgccacgtggagaagacttctcacttgcagatgtt
tttggtctgatagagcgaaatagaaaccgactagggattgcagagtatagcatcagccaa
tcaacacttgaaaccatcttcagtcattttgcagcagcgaattcttga
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integrated database retrieval system
