Lactuca sativa (garden lettuce): 111879510
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Entry
111879510 CDS
T05352
Name
(RefSeq) chaperonin CPN60-2, mitochondrial
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111879510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111879510
03110 Chaperones and folding catalysts [BR:
lsv03110
]
111879510
03029 Mitochondrial biogenesis [BR:
lsv03029
]
111879510
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lsv04147
]
111879510
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
111879510
Messenger RNA biogenesis [BR:
lsv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
111879510
Chaperones and folding catalysts [BR:
lsv03110
]
Heat shock proteins
HSP60 / Chaperonin
111879510
Mitochondrial biogenesis [BR:
lsv03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
111879510
Exosome [BR:
lsv04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
111879510
Exosomal proteins of other body fluids (saliva and urine)
111879510
Exosomal proteins of breast cancer cells
111879510
Exosomal proteins of colorectal cancer cells
111879510
Exosomal proteins of bladder cancer cells
111879510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
ChlI
AcnX_swivel_put
Flavoprotein
Motif
Other DBs
NCBI-GeneID:
111879510
NCBI-ProteinID:
XP_023731747
LinkDB
All DBs
Position
6:complement(97579569..97583694)
Genome browser
AA seq
579 aa
AA seq
DB search
MYRFAANLASKSRIANNKAQQIGSRLNWSRNYAAKDIRFGVDARALMLRGVEELADAVRV
TMGPKGRNVVIEQSYGPPKVTKDGVTVAKSIEFKDKIKNVGASLVKQVANATNDVAGDGT
TCATVLTRAIFSEGCKSVAAGVNAMDLRRGISMAVDSVVTNLKSRARMISTSDEITQVGT
ISANGEREIGELIAKAMERVGKEGVITIQDGKTLYNELEVVEGMKLDRGYISPHFITNTK
NQKCELDDPIVLIHEKKISSISSIIKVLELALKKQRPLLIVAEDVESEALATLILNKLRA
GIKVCAIKAPGFGENRKANLQDLATLTGGQLITEELGMNLENVEFEMLGSCKKVTVSKDD
TVVLDGAGDKKSIEERCEQIRSAIESSTSDYDKEKFQERLAKLSGGIAVLKIGGASDTEV
GEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELEKLQTANFDQKIGVQIIQNALKM
PVHTIASNAGVEGSVVVGKLLEQDDQDLGYDAAKGEYVNMVKNGIIDPLKVIRTALVDAA
SVSSLMTTTEAIVVELPKPASEGAPGMGGGMGGMGGMDF
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgtttcgcagcaaatcttgcttctaaatcaaggattgcaaataacaaggctcag
cagattggaagtaggttaaattggagcagaaactacgcagccaaagacatcagatttgga
gtcgatgctagggctttaatgcttagaggcgttgaagagcttgctgatgctgttagagta
accatgggtccaaaggggcgtaacgtggtgatcgaacaaagttatggacctcctaaagta
acaaaagacggtgtaacagtggcaaaaagcatcgaattcaaagacaaaatcaagaacgtt
ggtgcaagtcttgtcaaacaggttgctaatgctacaaacgatgtagctggtgatggtact
acatgtgcgacagttctcactcgagcaatcttttcagaaggatgcaagtcagttgcagct
ggtgtgaatgcaatggaccttcgacgtggtatttccatggctgttgattctgtggttaca
aatttgaagagtagggctcgtatgataagtacttctgatgagatcacacaggtaggtaca
atttctgcaaatggagaacgtgagataggtgaactgatagccaaggctatggagagagtt
gggaaagaaggtgtcatcacaattcaagatggaaagacgttgtataatgaacttgaagtt
gtggagggaatgaagctggacaggggatacatatctccacatttcatcacaaacacaaag
aatcagaaatgtgaactagacgaccccattgttctaatccatgagaagaagatatcaagc
attagttctataatcaaagtgttagagttggcacttaagaaacaaagaccattacttatt
gttgctgaagatgtggagagtgaagcattggctaccttgattctcaacaagcttcgtgct
ggcattaaggtttgtgccattaaagctcctggatttggtgagaacagaaaggcaaatctc
caagatcttgccactctcactggaggccagcttataacagaagaacttggcatgaatctt
gagaatgtggagtttgaaatgctgggctcttgtaaaaaggtcactgtgtccaaagatgac
acagttgttcttgatggtgctggtgataagaaatctattgaagagagatgtgaacagata
aggtcagcaattgagtctagcacatctgattatgataaagaaaagtttcaagaaaggcta
gccaagctttctggtggtattgctgtactaaagattggaggagctagtgatactgaagta
ggggaaaagaaagatagagttacagatgctttaaatgccacaaaggcagctgttgaagaa
ggaatcgtgccaggtggcggtgttgctcttctttatgcatctaaagagttggaaaaacta
caaacagccaactttgatcagaaaataggtgttcagataattcaaaatgcactaaagatg
ccagttcatacaattgcatctaatgctggggttgagggttctgttgttgttgggaagctt
ctagagcaggatgatcaggatcttgggtatgatgcagctaaaggtgaatatgtgaatatg
gtgaaaaatggaatcattgatcccttgaaagtcataagaacagccttggttgatgcagca
agtgtgtcttctttgatgacgactactgaagctattgtggttgaactcccgaagcccgct
agtgaaggtgctcctggaatgggtggtggaatgggaggaatgggtggaatggacttttga
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