KEGG   Lactuca sativa (garden lettuce): 111879625
Entry
111879625         CDS       T05352                                 
Name
(RefSeq) pre-mRNA-processing protein 40A
  KO
K12821  pre-mRNA-processing factor 40
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111879625
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lsv03041]
    111879625
Spliceosome [BR:lsv03041]
 Complex A
  U1 snRNP components
   U1 related factors
    111879625
 Complex B
    111879625
SSDB
Motif
Pfam: FF WW WW_TCERG1 FF_RHG35_4th
Other DBs
NCBI-GeneID: 111879625
NCBI-ProteinID: XP_023731855
LinkDB
Position
6:191521856..191528180
AA seq 804 aa
MANYPHNPSSQFRFLVPPQQGQFRPMGQGMPPGQSQPPQFSQPHQQMSPWPRPSQPANAT
SSFIAPPMPYMQHPNMTCTSSSQNSATTNTHLPGLTGPGAPLSSSFTFITSSFGHPQNAM
NASSNQQAMNVPNVFQEASSDWQEFIAADGRRYFYNKRTKMSSWEKPLELMTPVEKADSS
TFWKEFTTAEGKRYYYNKETKQSKWTIPDELKMAREQAEKEASRSSQSLSSGSSVNDSCL
TIPVVAVKPHSPVSPTVNDAPSVLVNTSSSPKTNLEITSSNDVANALDEASMQDIKEAKK
DISDVGKVNVTLLEEKVMDAEPLLYANKKEAKLAFRSLLESANLEADWSWEQAMRVIIND
KRYGALKTLGERKQAFNEYLVEKKKLEAEEKRLKLKKAKDEFMQMLEESKELTSSMRWSK
AIALFEDDKRYKAIERPSEREDLFQDYLVDLKKKERAKLQEEKRQNRLEYRHFLETCGFI
KVDTQWRKVKDWLEDDERCSRLEKIDRLEIFQEYIRELEKEDDEQRKLKKEEIKKMERKN
RDEFSKMMEEHVVSGMLTVNTQWVDYFQKVKESEAYHAVASNTSGATAKDLFEDVAEELE
KKYHDDKTRVKDALKIKKVSVAATWTFKDFKDAIQDDIISPPLSDINLQLVFEDLLKRAK
EKEKKEHKRRRNLAKDFTQLLDNIKEINASSTWEDCKQLFEESNVYRSIGDEKFCQVAFE
EYVARLVEKGTDNKHKQEDEKMKREKKEKGKDRERKHGQSPIDHRKSRKHVSHESDDESK
HKRHKDDGEHVHDHEEELEDGEIC
NT seq 2415 nt   +upstreamnt  +downstreamnt
atggctaattacccccacaatcccagttcacagtttcggtttttggttccacctcagcaa
gggcaatttcgtccaatgggacaaggcatgcctcctggtcaaagtcagccaccacagttt
tctcagccacatcagcaaatgtctccatggcccaggcccagtcagcctgccaatgccaca
tcatcatttatagcaccaccaatgccttatatgcagcatccaaatatgacttgtacatct
tcttcacagaactctgcaactacaaacactcatctccctggtttaactggtcctggagca
ccattatcttcttcatttacttttattacatcatcatttgggcacccacaaaatgcaatg
aatgcttcttcaaatcagcaagcgatgaacgttccgaatgtatttcaagaggcatcatct
gattggcaagagtttattgctgctgatggaagaagatatttttataacaagagaacaaaa
atgtcttcatgggagaagccattggagttgatgacacctgtggagaaggctgattcttcc
actttttggaaagagttcacaactgcagagggtaaaagatattactacaacaaggaaaca
aagcaatctaaatggacaatacctgacgaattgaagatggctcgtgagcaggctgaaaaa
gaagcttctagaagctctcagtctttaagttctggaagctcagtcaatgacagttgtttg
accattcctgtggtggcagttaagcctcactctcctgtttctccaacagtcaatgatgct
cctagtgttttagtcaacacaagttcatctccaaagacaaacttggagattacatcctca
aatgatgttgctaatgctttagatgaagcttcaatgcaggatatcaaggaagcaaaaaag
gacatatcagatgttgggaaagtgaatgtaacactattagaggaaaaagtaatggatgct
gaacccttgttatatgcaaacaagaaggaagcaaaacttgccttcagatctttactggaa
tctgcaaatcttgaagctgattggagttgggaacaggcaatgagagtaatcataaatgat
aaaagatatggcgcattaaaaacacttggtgaacgtaaacaggcatttaatgagtaccta
gtggaaaaaaagaaattggaggctgaagagaagcgcttgaagctgaaaaaagcaaaagat
gaattcatgcagatgttggaagagtctaaggaattaacatcatcaatgagatggagcaag
gctatagcattgtttgaagatgataaacgttataaggctatagaaagaccttctgaacgt
gaagatctttttcaagactacttagttgatcttaagaagaaagaaagagcaaaacttcaa
gaggagaaacgtcagaataggttagagtacagacattttcttgaaacttgtggctttatt
aaagtggacactcagtggcgaaaagttaaagattggttagaagatgatgaaagatgttca
cgccttgaaaaaattgatcgattagagattttccaggaatacatccgtgagctagagaag
gaagatgatgaacagaggaagttaaaaaaagaagaaataaagaaaatggagcgcaaaaac
cgtgatgaatttagcaagatgatggaagaacatgtggtttctggcatgcttacagtcaat
acccaatgggttgactattttcagaaggttaaggagtctgaagcttatcatgcagttgct
tcaaatacaagtggcgcaacagcaaaagatttatttgaggatgttgctgaagaattggag
aaaaagtaccatgatgataagacacgtgtgaaagatgctttgaagataaagaaggtgagt
gttgcagcaacatggacatttaaagatttcaaggatgctattcaagatgacatcatctct
ccacctttatcagatataaatttacagcttgtatttgaggacctactcaagagggctaaa
gagaaagagaagaaagaacataaaaggcgaaggaatcttgccaaagatttcacacaatta
ttggataacatcaaggaaataaatgcaagctctacatgggaggactgcaagcaacttttt
gaggaaagtaatgtgtatagatctattggagatgagaaattttgtcaagtggcttttgag
gaatatgttgctcgtttagtggagaagggaacagacaacaaacacaaacaggaggacgaa
aagatgaaaagggaaaaaaaagaaaagggtaaagacagagagaggaaacatggtcaaagc
cccattgaccacagaaagtcaagaaagcatgtttcgcatgaatccgatgatgaaagcaag
cataaaagacacaaggatgatggtgaacatgttcatgatcatgaggaggagcttgaagat
ggagaaatttgctag

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