Lactuca sativa (garden lettuce): 111879625
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Entry
111879625 CDS
T05352
Name
(RefSeq) pre-mRNA-processing protein 40A
KO
K12821
pre-mRNA-processing factor 40
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111879625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsv03041
]
111879625
Spliceosome [BR:
lsv03041
]
Complex A
U1 snRNP components
U1 related factors
111879625
Complex B
111879625
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
111879625
NCBI-ProteinID:
XP_023731855
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Position
6:191521856..191528180
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AA seq
804 aa
AA seq
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MANYPHNPSSQFRFLVPPQQGQFRPMGQGMPPGQSQPPQFSQPHQQMSPWPRPSQPANAT
SSFIAPPMPYMQHPNMTCTSSSQNSATTNTHLPGLTGPGAPLSSSFTFITSSFGHPQNAM
NASSNQQAMNVPNVFQEASSDWQEFIAADGRRYFYNKRTKMSSWEKPLELMTPVEKADSS
TFWKEFTTAEGKRYYYNKETKQSKWTIPDELKMAREQAEKEASRSSQSLSSGSSVNDSCL
TIPVVAVKPHSPVSPTVNDAPSVLVNTSSSPKTNLEITSSNDVANALDEASMQDIKEAKK
DISDVGKVNVTLLEEKVMDAEPLLYANKKEAKLAFRSLLESANLEADWSWEQAMRVIIND
KRYGALKTLGERKQAFNEYLVEKKKLEAEEKRLKLKKAKDEFMQMLEESKELTSSMRWSK
AIALFEDDKRYKAIERPSEREDLFQDYLVDLKKKERAKLQEEKRQNRLEYRHFLETCGFI
KVDTQWRKVKDWLEDDERCSRLEKIDRLEIFQEYIRELEKEDDEQRKLKKEEIKKMERKN
RDEFSKMMEEHVVSGMLTVNTQWVDYFQKVKESEAYHAVASNTSGATAKDLFEDVAEELE
KKYHDDKTRVKDALKIKKVSVAATWTFKDFKDAIQDDIISPPLSDINLQLVFEDLLKRAK
EKEKKEHKRRRNLAKDFTQLLDNIKEINASSTWEDCKQLFEESNVYRSIGDEKFCQVAFE
EYVARLVEKGTDNKHKQEDEKMKREKKEKGKDRERKHGQSPIDHRKSRKHVSHESDDESK
HKRHKDDGEHVHDHEEELEDGEIC
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atggctaattacccccacaatcccagttcacagtttcggtttttggttccacctcagcaa
gggcaatttcgtccaatgggacaaggcatgcctcctggtcaaagtcagccaccacagttt
tctcagccacatcagcaaatgtctccatggcccaggcccagtcagcctgccaatgccaca
tcatcatttatagcaccaccaatgccttatatgcagcatccaaatatgacttgtacatct
tcttcacagaactctgcaactacaaacactcatctccctggtttaactggtcctggagca
ccattatcttcttcatttacttttattacatcatcatttgggcacccacaaaatgcaatg
aatgcttcttcaaatcagcaagcgatgaacgttccgaatgtatttcaagaggcatcatct
gattggcaagagtttattgctgctgatggaagaagatatttttataacaagagaacaaaa
atgtcttcatgggagaagccattggagttgatgacacctgtggagaaggctgattcttcc
actttttggaaagagttcacaactgcagagggtaaaagatattactacaacaaggaaaca
aagcaatctaaatggacaatacctgacgaattgaagatggctcgtgagcaggctgaaaaa
gaagcttctagaagctctcagtctttaagttctggaagctcagtcaatgacagttgtttg
accattcctgtggtggcagttaagcctcactctcctgtttctccaacagtcaatgatgct
cctagtgttttagtcaacacaagttcatctccaaagacaaacttggagattacatcctca
aatgatgttgctaatgctttagatgaagcttcaatgcaggatatcaaggaagcaaaaaag
gacatatcagatgttgggaaagtgaatgtaacactattagaggaaaaagtaatggatgct
gaacccttgttatatgcaaacaagaaggaagcaaaacttgccttcagatctttactggaa
tctgcaaatcttgaagctgattggagttgggaacaggcaatgagagtaatcataaatgat
aaaagatatggcgcattaaaaacacttggtgaacgtaaacaggcatttaatgagtaccta
gtggaaaaaaagaaattggaggctgaagagaagcgcttgaagctgaaaaaagcaaaagat
gaattcatgcagatgttggaagagtctaaggaattaacatcatcaatgagatggagcaag
gctatagcattgtttgaagatgataaacgttataaggctatagaaagaccttctgaacgt
gaagatctttttcaagactacttagttgatcttaagaagaaagaaagagcaaaacttcaa
gaggagaaacgtcagaataggttagagtacagacattttcttgaaacttgtggctttatt
aaagtggacactcagtggcgaaaagttaaagattggttagaagatgatgaaagatgttca
cgccttgaaaaaattgatcgattagagattttccaggaatacatccgtgagctagagaag
gaagatgatgaacagaggaagttaaaaaaagaagaaataaagaaaatggagcgcaaaaac
cgtgatgaatttagcaagatgatggaagaacatgtggtttctggcatgcttacagtcaat
acccaatgggttgactattttcagaaggttaaggagtctgaagcttatcatgcagttgct
tcaaatacaagtggcgcaacagcaaaagatttatttgaggatgttgctgaagaattggag
aaaaagtaccatgatgataagacacgtgtgaaagatgctttgaagataaagaaggtgagt
gttgcagcaacatggacatttaaagatttcaaggatgctattcaagatgacatcatctct
ccacctttatcagatataaatttacagcttgtatttgaggacctactcaagagggctaaa
gagaaagagaagaaagaacataaaaggcgaaggaatcttgccaaagatttcacacaatta
ttggataacatcaaggaaataaatgcaagctctacatgggaggactgcaagcaacttttt
gaggaaagtaatgtgtatagatctattggagatgagaaattttgtcaagtggcttttgag
gaatatgttgctcgtttagtggagaagggaacagacaacaaacacaaacaggaggacgaa
aagatgaaaagggaaaaaaaagaaaagggtaaagacagagagaggaaacatggtcaaagc
cccattgaccacagaaagtcaagaaagcatgtttcgcatgaatccgatgatgaaagcaag
cataaaagacacaaggatgatggtgaacatgttcatgatcatgaggaggagcttgaagat
ggagaaatttgctag
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