Lactuca sativa (garden lettuce): 111879966
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Entry
111879966 CDS
T05352
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111879966
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsv03041
]
111879966
Spliceosome [BR:
lsv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
111879966
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_EML
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
NBCH_WD40
PRP4
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_SCAP
eIF2A
Beta-prop_Vps41
Beta-prop_Nup120_160
WD40_like
DUF4836
Motif
Other DBs
NCBI-GeneID:
111879966
NCBI-ProteinID:
XP_023732158
LinkDB
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Position
4:66346125..66348523
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AA seq
562 aa
AA seq
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MEIDDKENPNPNATNSPTQTTVQIAPVESPIPLIPTAITPPIAPIPVLPPPPSSIPRPLA
PLPSIRPPNGDAAKTTNENADSDEEGDESGPEYEISEESRLFREKQEKAKQDFLMKQRAA
ALAVPTNDKAVRSRLRRLGEPVTLFGEREMERRDRLRMLMAKLDSEGQSERLMKILEEEE
AAMNAAGMDDGGYEVEGEAIQYPFYTEGSTALLKARYEIAKDSVVKAAMRLKRARRKRND
PDEDEDAEINWALENAKTFSLDCSEIGDDRPLSGCSFSSDGKFLATCSITGVAKIWSMPE
IKLMSSLKGHTERATDVTFSPTNNHIATASADRTAKLWNTKGTLLHTFKGHLDRLARVAF
HPLGKYLGTTSFDKTWRLWDTETGEELLLQEGHSRSVYGIAFHPDGSLAASCGLDALTRV
WDIRTGRSILALEGHVKPVLGVSFSPNGYHLATGGEDNTCRIWDLRKKRSLYTIPAHSNL
ISQIKFEPQEGYFLVTSSYDMTAKVWSARDFKPVKVLSGHEAKVTSVDVVGDGQSIATVS
HDRTIKLWSSKNAEKEKAMDLD
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgacgacaaggaaaaccctaaccctaatgccaccaattcacctacgcaaaca
actgttcaaatcgcaccggttgaatctccgattccattaatcccaaccgcaatcacacct
ccaatcgctccaatccctgtactccctcctccgccttcctcaatcccacgtccacttgcc
cctcttccctctattcgtccaccaaatggcgacgctgcaaagactacaaacgaaaacgcc
gattccgacgaagagggtgacgagtcaggtcccgaatacgaaatctccgaagagagcaga
ttgtttagagagaaacaggagaaagcaaaacaagatttcttaatgaagcaacgtgctgca
gcactagcagtacccaccaacgacaaagcagtaaggtctagactaaggcggttaggtgaa
ccagtgacactgtttggtgaaagagagatggagaggagagataggttgagaatgcttatg
gcgaagttagattcagaagggcagtcggaaagactgatgaagattttggaggaagaagaa
gcagctatgaatgcagcaggaatggatgatggagggtatgaggttgaaggagaggctatt
cagtatccgttttatacagaagggtccacggctttgttgaaggcacgatatgaaattgca
aaagattcagtggtgaaagctgcaatgaggttgaagagagctagaaggaagaggaatgat
ccagatgaagatgaagatgcagagataaattgggctttggagaatgccaagactttttct
ttggattgtagtgagattggagatgacagacctctttcagggtgttccttttcttctgat
gggaagtttcttgccacctgctctataaccggagttgctaaaatatggagcatgcccgag
ataaagctgatgtcatcattaaagggacatacagaacgagcaactgatgttacattttct
ccaacaaacaaccacatagcaactgcttctgcagatcgcactgcaaaactatggaacaca
aaaggaacacttctacacaccttcaagggtcatctggatcgtttagctcgtgttgcattt
catccattaggaaagtatttaggaacaactagttttgataaaacatggagattatgggac
acagaaaccggtgaagagttgttactccaagaaggtcacagtagaagtgtgtatggaata
gcttttcaccctgatggctctttagcagcatcttgtgggctcgatgcacttacacgtgtg
tgggacatacgaacagggagaagtattcttgcattggaaggtcatgtcaaaccggtattg
ggtgttagtttttcgccaaatgggtatcatttggcgactggaggtgaggataatacttgt
aggatttgggatttgaggaagaagagatcgttgtacacgattcctgctcattcgaatctt
atttctcaaattaaatttgagcctcaagaaggatattttttggtgacctcttcttatgat
atgactgctaaggtgtggtcagctagagactttaagcctgtgaaggttctttcaggccat
gaagctaaagttacatctgttgatgtagttggagatggacagagtatagcgactgtttca
catgacaggacaataaagttatggtcaagcaaaaatgctgaaaaagagaaggcaatggat
cttgattaa
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integrated database retrieval system
