Lactuca sativa (garden lettuce): 111880206
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Entry
111880206 CDS
T05352
Name
(RefSeq) sister chromatid cohesion protein SCC2
KO
K06672
cohesin loading factor subunit SCC2
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lsv03036
]
111880206
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
111880206
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
PHD
Cnd1
INTS1_R4
PHD_2
C1_1
Motif
Other DBs
NCBI-GeneID:
111880206
NCBI-ProteinID:
XP_023732386
LinkDB
All DBs
Position
3:164542871..164557340
Genome browser
AA seq
1849 aa
AA seq
DB search
MSNSRVGGGGGIPRGISLANTVHSEVAPCLPLPSLPVFCGALDQDLRLIDEPTGSAKQLN
RSDVPDQASKISKLLQSTDVSYLNLRTKGTQSPYGHEGHLDLYNEVLRCNPEAFEHIAPG
SAKHQLYNNSVPNNKVSERKQLVQKLSTNNEPVKDKGETQRQHEHDAITSSSRKPKARKK
TSDDTLPTEPEGTELQDAAVERFCEVLEDLCGKAEITVDDREEGEAEWVLLPVGNIRTLV
KEVMAARTNKIQHFVPVGLLERMLKVLDHHIHSAEGLSITQSESSYSDVVSTIMVALESI
HAAVAIMAYNGMPKQIYKEEIIERIVEFSRRQIADVMVACDPSHRPTIKPTDNGNLSKKL
DNDDDDDEDDDDDDDDDDYDEDFGSASKKRRTTRNAKVKRSGTNKTSAAAHNILQKLCTI
IGFLKDLLMIERLSDSCILQLVKTCFSTLLVDNVQLLQLKAISLIGGIFYSYNQHRVYVM
DDLLHLLLKIPFSKKIPRTYHLADEEQRQIQMISALLIQLIHCSANLPDSLREAPDSNPL
FEIGIDSSYPFKSQEAVTDACCLFWSRVLQRFANTKNQNQDASEFKVMLENLVMDLLTTL
NLPEYPASAHILEVLCVLLLQNAGLKSKDVAARSIAIDILGTVAARLKREAVLCKKETFW
IVKELLGRDETDISPPDDTCSVCLDPKSEKPLEQCETCQRLFHVDCMGVREHDISGSSWF
CQLCLCKKQLLFLQSYCKTQGRVEGTHTRKKSKSKDKDKDTFDVSKTEIVQQMLLNHLQD
FASAEDVHIFTRWFYICLWYKDDPNGQEKFLYYLARLKSKAIVRGSGMGSSLLTRSSVKK
ITLALGQNNSFSRGFDKILHMLLASLREGSPVIRAKALRAVSIIVEADPEVLGDKFVQTA
VEGRFCDSAISVREAALELVGRYIASHPDVAQRYYGKVAERVKDTGVSVRKRAIRIIRDM
CTSNSNFLDFNSACIEIISRISDEESSIQDLVCKTFYEFWFEEPSGSQTQMYADGSSVTL
EIAKKTEQMVEMLRKRPNYQLLVIVIKRNLALDFLPQAAKAAGISPVMLASVRKRCELMC
KCLLEKILRVEETNVNDMEVGALHYVLLLHAFCLVDPALCAPASNPSQFVVTLQPYLKKQ
ADNRAVAQLVESIVFVIDSVLPLVRKLPQSVIEDLEQDLKQMIVRHSFLTVVHACIKCLC
SMSKVAGKGASVIRYLIQVFFKRLDSLGFENNQQVCRSLFCLGLLIRYGSSLLRMSLSST
QTLDVSGSLTLFKKYFYAEDFALKIRSLQALGYVLIAKPECMLEQDMGNILEATLSSSTD
ARIKMQSLQNLFEYLVDSEQQMENDKVEYEKVVNSKDASHVPVAAGAGDTNICGGIIQLY
WNSILGRCLDANEQVRQSALKIVEIVLRQGLVHPITCVPYLIALETDPQEANSKLAHHLL
MNMNEKYPAFFESRLGDGLQMSFIFMQSMNQNLPETPNAQNKTPNNTKGKPDGSSFSYAR
LGVSRIYKVIRGNRASRNKFMSSIVRKFDTPAWHNSVVTFLIYCTEILSLLPFVLPEEPL
YLIYAINRVIQVRSGGIESNMKTFLHKLQEQIPKQPENSVVQHEPEPEPEPEPEPEPTAQ
PVSGEEPIVDENAPVKEEAPNEIKEEAPTEVKEEVVATEVNNVTETEPMDVDQQSMNYAN
SVVIISPDDLPHIQGDCLAACALQLLLKLKRHLKIIYSLDDARCQAFSPADPPKPGEFLS
RQNIPFNVGEVDTTRPTTYQEILQRYQEFKNALREDTVDYSVYTANIKRKRPPGRKPGTT
KAVLQSRVNNGNNNKDSDDDSGDENWGSGTRVTTGVRRGGITTRSRQRL
NT seq
5550 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaattctcgtgtcggaggtggaggagggatacctagaggtatcagcctcgccaac
actgttcattccgaagtcgctccatgcttgccgttgccgtcgctgccggtattctgcggc
gctcttgaccaggacctgcggttaattgacgagcctacgggttcggccaagcagttaaac
cgtagtgatgttcccgatcaggctagcaagatatccaaacttctccagtctactgatgtg
tcttacctgaatcttagaacgaaaggaacccaatcaccctatggtcatgaaggacatcta
gacctttacaatgaggttcttagatgcaaccctgaagcatttgagcacattgctccaggt
tctgcgaagcatcaattgtataataattcggtacctaataacaaggtatctgaaaggaag
cagttagtgcaaaaactctccactaacaacgaacccgtgaaagacaaaggagaaactcag
cgtcaacatgaacatgatgctattacatcttcatctagaaaaccaaaagcaagaaagaaa
acatctgatgacacattaccaactgaaccagaaggcactgaacttcaagatgctgctgtg
gaaagattttgtgaagtgcttgaggatttatgtgggaaagcagaaattactgtggatgat
agggaagaaggtgaagcagaatgggtacttctgcctgttggcaatattagaactcttgtg
aaagaagttatggcagctcgaacaaacaaaatacagcattttgtccctgttggtcttctt
gaaagaatgttgaaagttctagatcatcatattcacagtgcagaaggcttatccattact
caatctgaaagttcttattcggatgtagtgtctacaattatggtagcacttgagtccatc
catgcagctgttgcaattatggcatataatggcatgccaaagcaaatctacaaggaagag
atcattgaaagaattgtggagttttcaaggagacaaatagcagatgtcatggtagcttgt
gatccatctcatcgtcccaccatcaaaccaactgacaatggcaatttgagcaaaaaactc
gataatgatgatgatgatgatgaggatgatgacgatgacgatgatgatgatgattatgat
gaggattttggatctgctagcaagaaaaggcgtactactaggaatgcaaaagtgaaaaga
tcaggaacaaacaagacttctgctgcagcacataacatacttcagaaactttgcaccata
attggttttctaaaggatttattaatgatagagcgcctctcagatagttgcatcttacaa
ctagtgaaaacatgcttttcaactttattggtggataatgttcaacttttacaattgaag
gcaatcagtctaataggcgggatattttattcatataatcagcatcgagtatacgtgatg
gacgatttacttcatctgctcttgaaaataccattttcaaagaagattcctagaacttac
caccttgcagatgaagagcaaagacagattcaaatgatatctgctttattgattcagtta
attcattgtagtgcaaaccttcctgattctttgagggaagcacctgattccaatccgtta
tttgaaattggaattgattctagttacccttttaaatcccaagaggcagtaactgatgca
tgttgtcttttctggagtcgtgtgcttcaacgatttgcaaataccaagaatcaaaatcaa
gatgcatctgagttcaaggtcatgttggaaaatcttgttatggatcttctgacaacattg
aatttacctgaataccctgcttcagctcatattcttgaggttctttgtgtgttactgctt
caaaacgcgggtctgaagtcaaaagacgttgctgcccgttccattgccattgatattctt
ggaacagttgctgcaaggctaaaacgcgaagctgtcctctgtaaaaaggaaacattctgg
attgtaaaagagttactaggcagggatgaaaccgacatttcacctccagacgatacatgt
tctgtttgtttggatccaaagagtgaaaagccattggaacaatgtgaaacttgtcagaga
ttatttcatgtagactgtatgggagtaagagaacatgacatatctggtagcagttggttt
tgtcagctctgtctctgcaaaaaacaactcctttttttacaatcttattgtaagactcaa
ggaagagtcgaaggcactcacacccgtaaaaagtcaaagtcaaaggacaaggacaaggac
acctttgatgtttcaaaaacggagatcgtgcaacagatgttattgaatcatcttcaggat
tttgcatctgctgaggatgtgcatatttttactagatggttttatatttgtttgtggtac
aaagatgatccaaatggacaagagaagtttttgtactaccttgccaggctaaaatcaaaa
gcaattgtgcgtggttctgggatgggttcatctttattgactaggagttctgtcaagaag
ataacattggcactgggacagaataactctttttctagaggattcgataaaattcttcac
atgcttctggcaagtttaagggagggttctcctgtgattcgtgctaaagcattgcgtgca
gttagtatcattgtagaggctgatccagaggttttaggtgataaatttgttcaaacagct
gttgaaggaaggttttgtgactctgctatatctgtacgagaagcagcattggaacttgtt
ggccgatatattgcttcacatcctgatgttgctcagaggtattatgggaaggtggctgaa
agagtgaaagatactggagtgagtgttcggaaacgagccatcaggatcattagggatatg
tgtacttctaattctaatttcctggacttcaacagtgcttgcattgaaatcatttctcgt
attagcgatgaagaatccagcattcaggaccttgtgtgcaagacattctacgaattctgg
tttgaggagccttcaggttcacaaacccaaatgtatgcagatggtagttctgtaacactg
gaaatagcaaagaagactgaacaaatggttgaaatgctgaggaaaaggcccaattatcag
ttacttgtcatagttattaaacgtaatttagcccttgattttttacctcaagcagctaag
gctgcaggaatcagtcctgtgatgcttgcatccgtaagaaaacgatgtgagctcatgtgc
aagtgcttgttagaaaagatattacgggtagaggaaacaaatgttaatgatatggaagtg
ggtgcacttcattatgtcctgctcttgcatgctttctgtttagtggatcctgcactttgt
gcaccagcctctaatccttctcagtttgtggtcacattgcagccatatttaaagaaacag
gctgataatcgagcagttgcccaactagtggaaagtatagtgtttgtgatcgactctgtt
ttgcctttggtaagaaagcttcctcaaagtgttattgaagatcttgaacaagatttgaag
cagatgatcgtccggcattcttttttgactgttgtccatgcttgcatcaagtgcctttgc
tccatgagcaaagttgcaggaaagggtgcatctgttattcgatatcttattcaagtattc
ttcaaacgcttggattcactgggattcgaaaacaatcagcaagtgtgtcgatctcttttc
tgtcttggattgcttattcgctatggaagctctttgttacgtatgtcactttccagcaca
cagactcttgatgtctctggcagcctcaccttattcaaaaagtacttctatgcagaggat
tttgctctcaaaatcagatcattacaggcattaggctatgttttaattgctaagccagaa
tgtatgttggaacaagacatgggaaatatcttagaagcaacactctcttctagcaccgat
gctcgcatcaagatgcaatcactgcagaacttgtttgagtaccttgtagattcagaacaa
cagatggagaatgataaagttgaatatgaaaaagttgttaatagtaaagatgcaagccat
gtccctgttgctgcaggtgcaggtgatactaacatctgtggtggaatcattcagttatat
tggaatagcattctaggtagatgtttggatgcaaatgaacaagttcgccagtctgctctt
aagattgtggaaatagttctacgccaaggtctagttcatccgattacatgtgttccatat
ctgatagcacttgaaacagatccacaggaagcaaactcaaagcttgctcatcatttgctc
atgaatatgaatgagaagtatcctgcctttttcgaaagccgtctaggtgatggactacag
atgtcatttatcttcatgcaatcaatgaaccaaaatcttcccgaaacaccaaatgcccaa
aacaagacacctaataacacaaaaggaaaaccagatggcagctccttctcttacgcaaga
ctcggtgtttctcgaatttacaaggtcattcgtggaaatcgcgcatcaagaaataaattc
atgtcttcaatcgtccgcaaattcgatacccccgcatggcataactcagttgtcaccttt
ttaatatactgtacagagatactctctttactccctttcgtgttacctgaagagcctctg
tatttgatttacgctataaatagagttatacaagttaggtctgggggaatcgagtccaat
atgaaaacattcctacataagttacaagagcaaatcccaaaacaacctgaaaatagtgta
gtccaacacgagccagagccagagccagagcctgagcctgagccagagccaactgctcaa
cctgtttctggtgaggagcccattgtagatgagaatgcaccagttaaagaagaggctccc
aatgagattaaagaagaagctcccactgaggttaaagaagaggtggttgctactgaggtt
aataatgtcactgaaaccgagcctatggatgttgatcaacaatcaatgaactatgccaat
tctgttgttattatatccccggatgatcttccacacatccagggtgactgccttgcagct
tgtgcattgcaactacttctgaagctgaaaaggcacctaaaaataatctatagtttagat
gatgctcgatgccaggctttttctccagctgaccctccgaaaccaggggagtttctttca
cgacagaatatcccattcaacgtgggtgaggtggataccactcgacccaccacctaccag
gagattttacaaagatatcaggaattcaagaacgcgttgagagaagacacagtcgactac
tcggtctacacagcaaatatcaaaaggaaacgtcctcctggaaggaagcctggaactaca
aaagcagtattacaaagccgtgtgaacaacgggaacaacaataaagattccgatgacgat
tccggtgatgagaattggggaagcgggacccgcgtaacaaccggtgtgagaagaggcggt
atcaccaccagaagtagacaaaggttatag
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