Lactuca sativa (garden lettuce): 111880239
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Entry
111880239 CDS
T05352
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv00040
Pentose and glucuronate interconversions
lsv01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
111880239
Enzymes [BR:
lsv01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
111880239
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
111880239
NCBI-ProteinID:
XP_023732417
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Position
9:complement(14221640..14226848)
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AA seq
440 aa
AA seq
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MSVSLRFSALCLFLVYMLFLSVNGVSSMEEETELQSLIDNSTMADRRNENIAIEKNDKAV
EENPERVASMVDMSIRNSTERRKLGFLSCGTGNPIDDCWRCDRNWQRHRKRLADCAIGFG
RNAIGGRDGRYYVVTDPNDDDPVHPRPGTLRHAVIQDQPLWIIFKRDMVITLKQELIMNS
FKTIDARGVNVHIANGGCITIQYITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADG
DGISIFGSSHIWIDHNSLSNCADGLVDAIMGSTAITVSNNYFTHHNEVMLLGHSDTYDRD
KIMQVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWVMYAIGGSADPTINSQGNRYLA
PVNPNAKEVTHRVMTAGRWRHWNWRSEGDLMLNGAFFVPSGKGAGASYARASSLSAKPSS
VVASLTSGSGALVCRRGREC
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtctctctcagattttcggcgctctgtttatttctggtttatatgcttttcctt
tccgtcaatggcgtttcgagtatggaggaggaaactgagttgcagagcttaatagacaac
tcaacaatggccgataggagaaatgaaaatattgctattgaaaagaatgataaggctgtt
gaagagaatccggaaagggtcgcttctatggttgacatgagcattcgcaatagtactgaa
aggaggaaattaggatttttgtcatgtggcaccgggaacccaatcgacgattgctggcgg
tgtgacaggaactggcagcgccaccgcaagaggttggcagattgcgctattgggttcgga
cgtaacgcaatcggcggtcgtgacggacggtattacgtcgtcaccgatcctaatgacgac
gaccccgtacacccccgaccgggaactctccggcacgccgtcatccaagaccaacctctc
tggatcatcttcaaacgcgacatggtgatcacactaaaacaagaactaatcatgaacagt
ttcaaaacaatcgacgctcgtggagtcaacgtccacatcgcaaacggcggttgcatcaca
atccaatacatcacaaacgtcatcatccacggactccatatccacgactgtaaaccaacc
ggaaacgccatggtccgaagctccccctcacactacggctggcgaacaatggctgacggt
gacggaatatccatcttcggctccagccatatctggatcgaccataattctctctctaac
tgcgccgatggtttagttgacgccattatgggttcaaccgcgattacagtttctaacaat
tacttcacccaccacaacgaggttatgttactaggccacagtgacacctacgacagggac
aaaattatgcaagtcaccatcgcatataatcatttcggtgaaggtcttgttcaaagaatg
ccacgttgtaggcacgggtatttccatgtcgtaaacaatgactacacacattgggtaatg
tatgctattggtggaagtgcagatcccacaattaacagccaaggcaaccgataccttgcc
cctgttaatcctaatgctaaagaggtgactcatagagtgatgacagctggaaggtggagg
cattggaattggagatcggaaggtgacctaatgttgaatggagcattttttgtcccatca
gggaaaggagcgggagccagttacgcacgtgcctcgagcttaagtgctaaaccatcgtct
gttgtggcgtctcttacttcgggatcgggtgcgcttgtttgtcgacgaggcagagaatgt
tag
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