KEGG   Lactuca sativa (garden lettuce): 111880285
Entry
111880285         CDS       T05352                                 
Symbol
LOC111880285
Name
(RefSeq) SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein
  KO
K12825  splicing factor 3A subunit 1
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111880285 (LOC111880285)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lsv03041]
    111880285 (LOC111880285)
Spliceosome [BR:lsv03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    111880285 (LOC111880285)
 Complex B
    111880285 (LOC111880285)
 Complex C
   U2 SnRNP specific factors
    111880285 (LOC111880285)
SSDB
Motif
Pfam: PRP21_like_P Surp ubiquitin
Other DBs
NCBI-GeneID: 111880285
NCBI-ProteinID: XP_023732465
LinkDB
Position
6:117948700..117952636
AA seq 793 aa
MLGSLPILPLPAPPSDGNLGPLPPSQVQDEPMPEAEDDQNKSNSAPASIATHTRTIGIIH
PPPDIRIIVDKTAGFVAKNGPEFEKRIIISNAANPKFNFLNGSDPYHAYYQHRLSEFRSQ
NQNPAQQSDAPPPETTPSSAPADGDAPEKTDPSAKFRPVRKILDPPEAEQYSIRLPEGIT
GEELDIIKLTAQFVARNGKSFLTGLTSRENNNPQFHFLKPTHSMFMFFTSLADAYSKVLM
PPKGLPEKLKKSVADMTTVLERGLHRLEWEQSQEQARQKAEDEIEQERLLMSMIDWHDFV
VVETIDFADDEDDDLPPPMTLEEVIRRSKMAAAVEEEEEVMEPGKEVEMEMDEEEVQLVQ
EGMRAASLEENGDDGNGNGKEVVAARVRVVAEENEPPMRIVKNWKRPEDRIPAERNPTKF
VVSPITGELIPVSEMSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISKNIVGLART
RPDIFGTTEEEVSNAVKQEIEKKNDEQQPKQVIWDGHTGSIGRTATQAMSQNADDLLDDG
RNLPGPAAPPPRPGVPSVRPLPPPPGLALNMPRVPPGAVQYAGVPPPVRPPTMVMPQRQV
PPPPAMQMGYGQQGYMNRPPLPVNPASIPVPLPPGSQFTPLPPRPFMTQHGMVMAPPLPM
PQGMLPPPPPEEAPPPLPEEPEPKKQRLDDSFLVPEDQFLAQHPGPIRIAVSVPNLDEGN
LKGQILEITIQSLSETVGSLKEKIAGDIQLPANKQKLSGKAGFLKDNLSLAYYNVGGGEM
LSLSLRERGGRKR
NT seq 2382 nt   +upstreamnt  +downstreamnt
atgttgggctcattgccgattttgcccctcccggcaccaccttccgatggcaatctgggc
ccacttccgccatcccaagtacaagatgagcctatgccagaggctgaggatgaccagaat
aagtccaattccgcccctgcatcaatcgccacacacaccagaacaatcggaatcatacat
ccaccaccagacatccggataattgtggacaaaaccgccggttttgtggcaaaaaatgga
ccagaatttgaaaaaagaatcatcattagcaatgcagcaaatcccaaattcaatttcttg
aatggttctgatccctatcatgcttactaccaacatcgcctttcagaattccgttcacag
aatcaaaatccggcacaacaatccgacgcgccgccaccggaaaccactccgtcttccgct
ccggcggacggtgatgcaccggagaagactgacccgtcggcaaaatttcgacccgttcgg
aaaattctcgacccgccggaggctgagcagtactcaatccggctgccggaagggatcacc
ggggaggagttggatataatcaaactcactgcccaatttgtagcaagaaatgggaaatct
tttttgacaggattaacgagtcgtgaaaataacaatcctcaattccattttctgaagccg
actcatagtatgtttatgttctttacatcactggcagatgcctactcgaaagtcctaatg
ccgcccaaagggttgccggaaaagctaaaaaaaagtgttgcggacatgaccacggtgctc
gaacgtgggttgcaccgcctcgaatgggagcagtctcaagaacaggcgagacagaaagcc
gaagatgaaattgagcaagaaagattgttaatgtccatgatcgattggcatgattttgta
gtggtggaaactattgattttgcagatgatgaggatgatgatttgccgcctccgatgact
ctcgaggaggttataaggaggagcaagatggcggcagcggtggaggaagaggaggaggtg
atggagcccgggaaggaagttgaaatggaaatggatgaagaggaagtacaacttgttcaa
gagggtatgcgggcggcaagtttggaagagaatggtgatgatggaaacggaaatggaaag
gaggtggttgctgccagggtgagggtggtggcggaggaaaacgagccgccaatgaggatc
gtgaagaactggaagcggccggaggataggattccggcggagcgaaatccgactaagttc
gtggtttctccgatcacaggagaattaattccggtcagtgagatgtcggagcatatgcga
atctctcttattgatccgaaatataaagaacaaaaagagagaatgtttgcaaagattcgg
gagacaacacttgctcaagatgatgaaatttctaaaaatattgtggggcttgcccgaacc
cgcccggatattttcgggacaaccgaggaagaggtgtcaaacgcggtcaaacaagagatt
gagaaaaagaatgatgagcagcagccaaaacaagtgatttgggatggacacaccggaagt
attggccggactgcaactcaggccatgtcccagaatgccgatgatctacttgatgatggc
cggaatcttccgggtcctgctgctcctcctccacggcctggtgttccctcggttcgcccg
cttcctccaccgcctgggctcgccttgaatatgcctcgtgtcccccctggtgccgtgcag
tacgcaggtgtcccgccgccagtgaggccgcccacgatggttatgccgcaaagacaggtg
ccgcctccgccggcgatgcaaatgggttatggtcagcagggttatatgaaccggccgccg
cttccggttaatccggctagtattccggtgccgctgccaccgggatctcagtttacaccg
ctgccaccgcgtccttttatgacccagcatgggatggttatggctcctccactgcctatg
cctcaaggaatgctgccgccgccgccaccggaggaagctcctcctccacttcctgaagaa
cctgagccgaagaagcaaagacttgatgattcttttcttgtccctgaggatcagttcttg
gctcaacatccgggacctattcgtattgctgtatcggtgccaaatcttgatgaaggaaat
ctgaaaggacaaatacttgagataacgattcagtcattgtcggagacagttgggagtttg
aaagagaaaattgctggagacattcagctgccagcaaacaaacagaaactgagtgggaag
gcagggtttttaaaggacaatttgtctcttgcgtattacaatgttggtggaggcgaaatg
ctttctctgtctttaagagaacgtggtgggcggaaaaggtaa

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