KEGG   Lactuca sativa (garden lettuce): 111880828
Entry
111880828         CDS       T05352                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    111880828
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lsv03021]
    111880828
Enzymes [BR:lsv01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     111880828
Transcription machinery [BR:lsv03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     111880828
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3 RDM3_C Clink
Other DBs
NCBI-GeneID: 111880828
NCBI-ProteinID: XP_052621483
LinkDB
Position
7:42805516..42816125
AA seq 1996 aa
MMEENPSPAVLEGKITGISFSLATEDEIRKASISDCPISHTSQLSNPFLGLPLEVGRCES
CGTAEPGKCEGHFGYIELPIPIYHPSHLNELKRILSLICLKCLKFKNRRLPNKTTGMFEK
VLTVCCEETANVTVDVVQKQDGASYLQLKVPSKTCKEGLWEFLERYGYRYGDGHKRPLLP
SEVLVMLKKIDKEKATKKKLAGRGCFFQEGYIMQHLPIPPNCLSTPDVSDGINVMSSDIS
MTMLKKVLRQVEIIKSSRSGIPNFESLEVEVNDLQNAVAQYLQSRGAKASPNKNIRYGIA
KELNDSSSTKAWLEKMKTLFISKGSGFSSRSVITGDPYKGVGEIGIPFEIAQRITFEERV
TEYNMKFLQKLVDDKLCLTYRDGNNTYSLREGSKGHTFLKPGQVVHRKIMEGDVIFINRP
PTTHKHSLQALSVYIHDDHTFKINPLICGPLSADFDGDCIHIFYPQSPEAKAEVLELFAV
EKQLLSSHSGNVNLQFGSDSLLSLKTLFKKFFFKKSEVQQLALFTSSTLPKPSMLKVRGS
GPLWTVLELLETSLPPGFDCSGERFLIKDSKILKLDYSREVIQSIINDVISSIFFTKGPK
EVLKLFNSLQPMLMENLSGEGFNLSLEDFIVPKSILRDIETELQDLSSLLYHLRSTYNEV
IALQLDKHLRAVKSPISEFILKYSSMGSLIDSKSDSAVTRIIQQIGFLGLQILEKGRLYS
RTLAEDLSKHFRGNYPFPEKYPSEEFGLIRGCLFHGLDPYQELVHSISNREVMVRSSRGL
TEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVHTQNLFAAGEPVGVLAATAM
SNPAYKAVLDSSPNSNSSWDMMKEILLCGVNFKNVNNDRRVVLYLNDCDCGNKYCLEKSA
YFVKNHLRKVSLKDTAVEFLIEFTRQQTSENAEIGAGLVGHIHLNQAMLKESKINMEEVL
AKCEDTLNVYRKKKKEVGLLFRSIALSCGECSFHQSSENKWMPCLKFFRQDTGGLQLEKA
ARILADFVCPVLLDTIIKGDPRVKEANIIWIGPESTVWIRNPNKDQSSEFSNPNKDKKGE
FSNPNKDQKGELAIDVVLEKAAVKKSGDAWRIVMDTCLPIMHLIDTTRSIPYAIKQVEDL
LGTSCAFEQAVQRLSTSVSMVSKGMLKEHLLLLANSMTCAGTLVGFNQAGIKALSKTLNF
QVPFSEATLYTPKRCFEKAAEKCHSDSLSSIVAACSWGKPVAVGTGSRFDILWDTREVEL
NQKDGIDVYNFLHLVHGGSEEEADNGCLGGEVDSFDMEDNFMEVGSPEHDSGAPKAVFED
SLELNLGQMETAAPEDGNSSGGWGAAVKTTPTDGWGAAVKSTPTDSSGSWGAAVKTTPTT
EGSWGAAVKTTPTTEGSWGAAVKTTPTTEGSWGAAVKATPATEGSGSGWGKKAEEPAWGG
KKPDSDTGAGSGSVPWGKREETAWGKKVNSGDSAAAWGKKDDTGDSAPWSKKADTGGSTP
APWGKKADTAAPAPWGKKDDTGGSGSAPWGKKADTGVSTPAPAPWGKKDDTGSAPWGKKA
DTRGSGSAPWGKKDDTGSVPWGKKDDTGSAPWGKKDDTGSTPWGKKDDTGSAPAPWGRKD
VKADEPSQVEESQWGKIESSGSWGKSVQKPDSVPKWGGNNKSDEGSDWSKKVEEKTESKD
GWGSQSQWGAKNPEGGSSEDTTTTTNEGEKPGGAWGWNRKPEQKPDQGQGGWKKKEGWGP
RRDRPARPAGGPNDGPRPGGGGGGPFTASRQRLDMFTSDEQEILADIEPIMLSIRRIMSQ
EGYNDGDPLSAEDQTYILENVFNHHPEKAQKMGAGIDYVMVTKHTLFQDSRCLFIVSTDG
RKEDFSYRKCLENFVRGKYPDKVDEFMSKYFKKPQPRPPREPRPPGPGQDEAIGTPNSQS
QSGWKRGDANDEGGTHTPRSQPGWNRDSGSDAGTPRAQSQWGGSEAGTPVSGSGWKKEAE
GGGGWNKGGGGGGWGS
NT seq 5991 nt   +upstreamnt  +downstreamnt
atgatggaagaaaatccttcaccagctgttttggaagggaagattactggaataagtttc
tcattggccactgaagacgagattcgtaaagcttccattagtgattgccccattagccat
acgagccagctttccaatccgtttcttggacttcccctcgaagtgggaagatgtgaatct
tgtggcacagctgaacctggcaaatgtgaaggtcattttgggtacattgagttgccgatt
ccgatatatcatccatctcatcttaatgagctcaagcgtatcttgagtttaatatgtctc
aagtgtttaaagttcaagaatcgcaggttgccaaacaagaccactggtatgtttgaaaag
gttttgactgtatgttgcgaggaaactgcaaatgtaactgtggatgtggtacaaaaacaa
gatggtgcatcttacttgcagcttaaagttccatctaaaacatgtaaagaagggttatgg
gaatttcttgaacgttatgggtacagatatggtgatggacacaagcgacctttgcttcca
tctgaggtgttggtgatgttaaagaaaattgacaaggagaaggcaactaaaaagaagtta
gctgggaggggatgtttttttcaggaagggtatatcatgcaacatcttcccatccctcca
aattgtctctcaacaccagatgtctctgatggcatcaatgttatgtcatcggatatttca
atgacaatgcttaaaaaagttttgagacaagtggaaattattaagagttccagatctggg
attccaaactttgagtctcttgaagtcgaggttaatgatctacagaatgctgtagcgcaa
tatcttcaatcaaggggtgctaaggcctcccccaacaaaaatatacgctacggaattgca
aaagaactgaacgactcctcttcaaccaaagcatggcttgagaaaatgaaaactcttttc
ataagtaaaggatcagggttttcttccagaagtgtcataacaggtgacccatacaaaggt
gtgggcgaaataggaataccatttgagatagctcagagaatcacatttgaagaaagggta
actgaatacaacatgaagttccttcagaagttggtagatgacaagttgtgtttaacatat
cgagatggcaataacacatattctttaagagaagggtcaaaggggcacacgtttttgaaa
ccaggacaggttgttcacagaaagattatggagggagatgtgatttttatcaataggcca
cccactacccataagcattcgttacaagctttatcggtttatatccatgatgatcatact
ttcaagattaatcctttaatctgtgggccattgagtgctgattttgatggagattgtatt
cacatcttttaccctcaatccccagaagcaaaagctgaagtgttggagctttttgcagtt
gaaaagcagcttttgagctcacacagtggaaatgtaaacttgcagtttgggtctgactct
ttgttatctcttaaaactctgttcaagaaattctttttcaagaaatcagaagtccaacag
ctggcattgttcacatcaagtacattgcccaaaccttcaatgttaaaagtccggggttct
ggcccgttgtggacggttttggagcttctggaaacatctttacctccgggattcgattgc
tctggggaacggttcttgatcaaagacagcaaaatattgaagctggattacagtcgagag
gtgatacagtccatcatcaatgatgtgattagttcaatttttttcaccaaaggcccaaaa
gaggtgttgaagctgttcaactctttgcaaccgatgctaatggaaaatctttccggtgag
ggatttaatctaagtttggaggattttattgtcccgaaaagtatattgagagatatcgaa
accgagcttcaagatttatcttctttgctatatcatttgagatcaacctacaacgaggtg
attgcgttacagcttgacaaacatctgagggcagtaaaatcgccaatttctgaatttatc
ttgaagtattcgtcgatgggtagcttgatcgattcaaagagcgattctgctgttacaaga
atcatccaacaaattgggtttttgggactacagattctggaaaaggggaggttgtattca
agaactttggcggaggatttatcgaaacattttcgcgggaactatccgtttccagagaaa
tacccgtctgaggagtttgggttgatccggggctgcttattccatgggcttgacccgtat
caggaattggtgcattctatttcaaatcgtgaggttatggtgaggtcttcgagagggttg
actgaacccggaactttgttcaaaaacttgatggctattcttcgtgacgttgtaatctgc
tatgatgggactgtgagaaatgtgtgtagcaattcaatcatacagtttgaatacggggtc
catacacagaatttgtttgctgctggtgaaccggtgggagtattggcggcaaccgccatg
tcaaaccctgcatacaaggcggttcttgattcttccccgaatagcaactcctcttgggat
atgatgaaggagattctgctttgtggagtgaatttcaagaacgtgaataatgatcgtcgg
gtggtactgtatttgaatgactgtgattgtggcaataagtattgtcttgagaagtctgca
tattttgtgaaaaatcatttgcgaaaagtcagccttaaagatactgctgttgaattcctt
atagaattcacaagacagcaaacaagtgaaaatgctgaaattggtgcaggacttgttggt
catattcatctgaatcaggcaatgttgaaagaatccaagattaacatggaagaggttctt
gcgaaatgtgaagacaccctcaatgtctaccggaagaagaagaaagaagttggattattg
ttcaggagtatagctttatcttgcggtgaatgttcgttccaccaatcatcagaaaacaaa
tggatgccgtgcttgaaattctttaggcaggacactggtggtctccagttggagaaggca
gcacgcatacttgctgacttcgtttgtcctgttcttttagatacaattataaaaggtgat
ccacgggttaaagaagcaaatatcatttggatcggtccggaatcaaccgtttggattaga
aatccaaataaggatcaaagcagtgaattctctaatccaaataaggataaaaagggtgaa
ttctctaatccaaataaggatcaaaagggtgaattggctattgatgtggttcttgagaag
gcagctgttaagaaaagcggggatgcatggagaatagtgatggacacttgccttcccata
atgcatctgatcgacactacacgatccattccttatgcaatcaaacaagtcgaggatctt
cttggtacatcttgtgcatttgagcaagctgtccagcgcctctcaacctctgtttcaatg
gtttccaaaggcatgctgaaagagcacctacttctattggcgaatagcatgacatgtgca
ggaactcttgttggtttcaatcaagctggcataaaggccttgtccaaaacccttaatttc
caagtaccattttccgaagcgacattatacacaccaaaacggtgttttgagaaggcggct
gagaagtgccattctgattctttatcgagcattgtggctgcttgttcttggggcaaacca
gttgctgtgggtacaggatctcggtttgatatactgtgggacacgagagaggttgaactt
aaccaaaaggatggcattgatgtatacaatttccttcatttagtacacggtggatcagaa
gaagaagctgataatgggtgtcttggtggtgaggttgatagtttcgacatggaggataat
ttcatggaagtggggtctcctgagcatgattccggtgcacctaaagcagtttttgaggac
agtttggaactaaatcttggtcaaatggagactgcagctcctgaagatgggaactccagt
ggcggatggggggcggctgtgaagactacaccaactgatggctggggggcggctgtgaag
agtacaccaactgatagcagtggcagctggggggcggctgtgaagacgacacctacgact
gaaggtagctggggggcggctgtgaagaccacacctacgactgaaggtagttggggggcg
gctgtgaagactacacctacgactgaaggtagttggggggcggctgtgaaggccacacca
gcaactgaaggatctggatcggggtggggcaaaaaagcggaagaacctgcatggggcggg
aagaaaccggattcagacactggggcaggatcaggatcagttccatggggtaaaagagag
gaaactgcttggggtaagaaagttaacagcggggattcagctgctgcctggggtaaaaaa
gatgacactggggactcagctccatggagcaaaaaagctgacactgggggttcaactcca
gctccatggggtaaaaaagccgacactgcagctccagctccatgggggaaaaaagatgac
accgggggctcaggctcagctccatggggtaaaaaagccgacactggggtttcaactcca
gctccagctccatggggcaaaaaagatgacaccggatcagctccatggggtaaaaaagct
gacactaggggttcaggttcagctccatggggcaaaaaagatgacactggatcagttcca
tggggtaaaaaagatgacaccggatcagctccatggggcaaaaaagatgacaccggatca
actccatggggtaaaaaagatgacactggatctgctcccgctccatggggaagaaaggat
gttaaagctgacgagcccagtcaagtggaagagtctcagtggggtaaaatagagtcgtct
ggttcctggggcaaatcagtacaaaaacctgattccgttccgaaatggggtgggaataat
aaaagcgatgaggggtcggattggagcaaaaaggtggaggaaaaaacagaatccaaggat
ggatggggttctcaaagtcaatggggtgcaaagaatcctgaaggggggtcatcagaagac
accactaccaccaccaatgaaggcgagaaaccaggaggagcttggggatggaatcggaaa
cccgagcagaaaccggatcagggacagggtggctggaaaaagaaggaagggtgggggcca
aggagagaccggcctgctcgcccagctggtgggcctaatgacgggccgaggccgggtggg
ggtggcggtggaccgttcactgcatctcgtcaaaggctggatatgtttacttcagacgaa
caggagattcttgctgatattgagcccatcatgctttctattaggagaatcatgagccaa
gagggatataatgatggcgatcctttgtctgctgaagatcaaacatatatcctagaaaat
gtattcaaccatcatccagaaaaagctcagaaaatgggagctggaatcgattacgtcatg
gtgacgaagcatacgcttttccaagacagcaggtgtcttttcatagtgtcaacagatggg
cggaaagaggacttctcttacaggaagtgtttggagaactttgttcgtggaaaatatccg
gacaaagtggatgaattcatgtcaaaatacttcaagaagcctcaacctcgccccccaagg
gaaccacgcccccctggcccaggtcaagatgaagccattgggactcctaattcccaatct
cagtctggatggaaacggggggatgccaatgatgaaggcggcacccacacccctcgctct
cagcctggatggaaccgggattctggtagtgatgccggaacaccccgtgctcaatcgcaa
tggggagggagtgaggcgggaacacctgtttctggttctggatggaagaaagaggcagaa
ggcggaggaggatggaacaagggaggtggaggagggggttgggggtcctga

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