Lactuca sativa (garden lettuce): 111881087
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Entry
111881087 CDS
T05352
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-3
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03022
Basal transcription factors
lsv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111881087
09124 Replication and repair
03420 Nucleotide excision repair
111881087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsv03021
]
111881087
03400 DNA repair and recombination proteins [BR:
lsv03400
]
111881087
Transcription machinery [BR:
lsv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
111881087
DNA repair and recombination proteins [BR:
lsv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
111881087
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
111881087
NCBI-ProteinID:
XP_023733246
LinkDB
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Position
1:83513229..83518625
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AA seq
606 aa
AA seq
DB search
MMETQVVKRAKYKSSVKDPGVRGTLKMTRERFVFMPNDPSSSIRLNVEFRLIKGHKSSKE
GSNRPALLNLTQDQGNYIFEFENFSDRELCRDFVAKAITFYGEGGSEKAVPLPHKDEQLS
SAEMERRIKLLQEDSELQKLHKQFVMGGVLSETEFWATRKKLLDVNNTSSSRKAKQRVGL
KSDMIFNVKPSSDGQSNKVTFNLTPEMIHQIFAEKPAVRQAYLNFVPNKMTEKDFWTKYW
RAQYLHSTRNIVAAAAEAAEDEELAVFLRQDAILASEIKHKIRKVDPTLDMEADEGDDYT
HIPGHGLATESGKDELEAQYEPFKRSFLQDINRHAAVVLEGRTVDFETEGDTRSVAQALA
TCKRVELAKEASSDGNLVHQERLDRITRMAEIEDLQAPRDPPVAPLSIKDPRDYFDSQQQ
VVGMGMGMGDELGGGGRKFKSRMNTSETYASLRGFISEIKTLGLTDPVVRPEVAVKVLNG
LTQTISSSKYQRGFGKNPHDSILDTLPTVTKDELLLHWTSIQELLKHFWSSYPITTSYLY
TKVSRLKDAMSQIYPKLQEIKESVQSDSRHQVSLLVQPMLQALDAAFAHYDAVDQRKRSS
TNGYNV
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgatggagacgcaggttgttaaacgtgcgaaatacaaatcttctgtcaaagaccctggt
gttcgtgggacattgaaaatgacaagggagaggtttgtgtttatgcctaatgatccgtca
tcctccatcaggcttaatgtcgaattcagacttataaaaggacacaaatccagcaaggag
ggttcaaacagacctgccttacttaatcttactcaagatcagggtaattacatctttgag
tttgaaaatttctcagacagggaactttgtcgagactttgtagccaaagctatcacattt
tatggggagggtggctctgaaaaagctgttccacttccacacaaagatgaacaacttagc
tcagcagaaatggagcgtaggattaagctgctgcaagaggacagtgagctgcagaagctt
cataagcaatttgttatgggaggtgtgttgtcagagactgaattttgggctacaagaaag
aagttgctagatgtgaataatacaagtagcagcagaaaagcaaaacaaagagtggggttg
aaaagtgacatgattttcaatgtcaaaccttcatctgatggtcagtcgaacaaagttaca
tttaacttgacaccagagatgattcaccagatttttgctgaaaaaccagcagtgaggcag
gcatatctaaattttgtacctaacaagatgacagagaaagacttttggacaaaatactgg
agagcacaatacctccacagcaccagaaatattgttgctgctgctgcagaggctgcagaa
gatgaagaacttgcagttttcttaaggcaagatgctattttggctagtgaaattaagcac
aagattaggaaggtagatccaactttggacatggaggctgatgaaggagacgattacaca
catattccaggtcatgggctagctactgaaagtgggaaggatgagctggaagcacaatat
gagccattcaaaagatctttcttgcaagacatcaacagacatgctgcagttgttcttgaa
ggaagaactgtagattttgagactgaaggggatacaagatctgtagctcaagctcttgct
acttgtaaacgtgttgagttagctaaagaagcttcttctgatgggaatttggtgcatcaa
gaacggttggatcggataacacgaatggctgagattgaggatctacaggccccacgtgac
cctcctgttgcaccactatctataaaggatccacgggattactttgattctcaacaacaa
gttgtgggaatgggaatgggaatgggtgatgagttaggtgggggaggaaggaagtttaaa
tctaggatgaacacatctgagacgtatgcttctttaaggggttttatatctgaaatcaag
accctaggtttgactgatcctgttgttagacccgaagtggctgtgaaggtgttgaatggg
ttgacccagactatatcaagctccaaatatcaacgtgggtttggtaaaaacccacatgac
agcatattggataccttgccaactgtcacaaaagatgagcttttgcttcattggacgtct
attcaggaattgttaaaacatttctggtcctcatatccaatcacaacttcatatctttat
acaaaggtgagccggctgaaggatgccatgtcacaaatctacccaaagctacaggagatt
aaagaatctgtgcagtcagattccaggcatcaagtttccctccttgttcaaccaatgtta
caggctttagatgctgcttttgcacactatgatgcagtagatcaacgcaagagatcttct
acaaatggttacaatgtctaa
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