Lactuca sativa (garden lettuce): 111881308
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Entry
111881308 CDS
T05352
Name
(RefSeq) protein CHROMATIN REMODELING 8
KO
K10841
DNA excision repair protein ERCC-6
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
111881308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lsv03036
]
111881308
03400 DNA repair and recombination proteins [BR:
lsv03400
]
111881308
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
111881308
DNA repair and recombination proteins [BR:
lsv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
111881308
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
WHD_Rad26_CSB
HDA2-3
ResIII
WHD_SOWAH
Motif
Other DBs
NCBI-GeneID:
111881308
NCBI-ProteinID:
XP_023733488
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All DBs
Position
9:complement(12382099..12386977)
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AA seq
1179 aa
AA seq
DB search
MKEEEEDRALLSSLGVTSANPEELEHDILEEARNHAEQGSQVGGTTDDEHLERRKGNEPS
STNQTDVLNKLRAINVEIDAVASTVEDVKVFSRTEEHAHSGDDENGEKSILQASSNDLTL
QHALATDRLESLKRTKAQLEKQIGHLGNEGIPVDNKHEKLLKSLVKEEPNHKRKKKEVPT
TNKKSKKRHKTVAFNDDGDFDAVLNAASAGFVETERDELVRKGILTPFHNLKGYERRIEE
SGPSHTVEEDNDLPSTSIARAVKSISEAAQSRPTTKLLDPDSLPRLDAPTRPFQRLQTPF
KIPQSLENHERKSKDSKDSNRKKRRPLPGKRWRKVASREENSLEEIEDARGSSIEEDNQE
GVEDDEGNEDPSFVTLEGGLKIPDSIFSQLFDYQKVGVQWLWELHCQRAGGIIGDEMGLG
KTIQVLSFLGALHFSNMYKPSIIICPVTLLRQWRREAKKWYPSFHVEILHDSARDAPYKK
KQPKSDESDYETTESDEEGNESLPSRNNNNNNKKWDSLINRVLRNESGLLITTYEQLRIL
GEKLLDIEWGYAVLDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNRLSELWSLFDF
VFPGKLGVLPVFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVN
AQLPTKTEHVLFCSLTADQRCLYRAFLASSEVEQIFNGDRNSLYGIDVMRKICNHPDLLE
REHAAQNPDYGNQERSGKMKVVAQVLKVWKEQGHRVLLFAQTQQMLDILESFLIGDSYTY
RRMDGLTPVKQRMTLMDEFNNSPDIFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDM
QARERAWRIGQTKDVTIYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARDMK
DLFTLNDDKENGSTETSNLFSQLSEDVNIVHQNENPETLAKKKQKEKIDDSNEGGVEEET
NILRSLFDAQGIHSAVNHDVIMNANNDEEKVKLDEQASQVAHRAAEALRQSRMLRSRESI
AVPTWTGKSGTAGAPMGGGRKFGSMVNSKLVAKTRIEHGSGSGSSKFVVGASGGKALSSS
ELLAKIRGTQEQAVGDALGAGSSVRPQNLGGVQPEVLIRQICSFLQQRGGTTDSGSIVDH
FKDRIPSKDLPVFKSLLKEIATLQKTPNGSSWILKSEYQ
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaagaagaggaagatagggctttgttaagtagtctgggcgtcacatcagcaaac
ccagaagagcttgaacatgatatactagaagaggcaagaaaccatgctgaacagggcagc
caagtgggaggaaccacagatgatgaacatcttgagagaagaaaaggcaatgaaccatca
tccacaaaccaaacagacgtccttaataagttaagagccataaatgttgaaatagatgct
gttgcatctacagttgaagatgtgaaagttttttcaagaactgaagaacatgcacacagt
ggtgatgatgagaatggagaaaaaagcatcctgcaggcttcatccaatgatctaaccctt
cagcatgctctagcaactgatcgattggaaagcctgaaaagaacaaaagctcaactcgag
aaacaaattggacatttgggcaatgagggtattcctgtagataataaacacgaaaagctc
ttgaaatctcttgtaaaggaagagccaaatcacaagagaaagaagaaagaagtcccaaca
acaaataagaaatcaaagaagcggcataaaacagtagctttcaatgatgatggtgatttt
gatgcggttttaaacgcagcctccgcaggatttgttgaaacagaaagggatgaattggtc
cggaaaggaatcctaactccattccataacctcaaaggatatgaacgccgtattgaagaa
tcaggtccatctcatacagttgaagaagacaatgatcttccctccaccagcatagcaaga
gctgttaaatcaatatcagaagctgcacaatctcgccctacaacaaaactgttagatcca
gattccctaccaagactcgatgcaccaacacgcccttttcaaagacttcaaacacctttc
aagattccccaatccctggaaaatcatgaaagaaagtctaaagattcaaaagattcaaat
aggaaaaagagaaggcctttgcctgggaagagatggaggaaggtagcatcacgtgaggaa
aattctcttgaagaaatcgaggatgcaagagggtctagtattgaagaagacaatcaagaa
ggtgttgaagatgatgaaggcaatgaggatccttcttttgtgacactagaaggtggatta
aagattccagattcaatcttcagccaactttttgactatcaaaaggtgggagttcagtgg
ttgtgggagcttcattgccaaagagctggtggaatcataggagatgaaatgggacttggg
aaaaccattcaagtcttgtcttttcttggagctttacatttcagtaacatgtataaaccc
agtataatcatatgtccagttacccttttgcgtcaatggaggagggaagcaaagaaatgg
tatccatcttttcatgtggagatactacacgattctgctcgagatgctccttataaaaag
aagcagcccaagtcagatgaaagtgattatgaaactacagaaagtgatgaagaaggaaat
gaaagtttaccttcaagaaacaacaacaacaacaacaagaagtgggattctttgataaac
cgtgttttgagaaacgaatctggtttattgattactacgtatgaacagcttcgaatcctt
ggggaaaaactgcttgacattgaatggggatatgcagtattggatgaaggacacagaata
agaaacccaaatgcagaagttactctagtttgcaaacagttgcaaacagttcatcgtatc
ataatgaccggagcacctatccagaacagattaagtgaactatggtcattgtttgatttt
gtatttcctggaaagttaggggtattaccggtatttgaagcagaatttgcagttcccatt
tctgttggtggatatgctaatgcatcacctttgcaagtatccactgcttacagatgtgca
gttgttctacgtgacctaataatgccttatctgcttcgaagaatgaaagcagatgtaaat
gctcagcttccaacaaaaacagaacatgtcctattttgtagccttacagcagatcaaaga
tgcttatacagagcatttcttgcgagttcagaagtggaacagatcttcaatggagacaga
aactcactttatggaatcgatgtgatgcgtaagatttgcaatcaccctgatttacttgaa
cgagaacatgcagctcagaatcctgattatggaaaccaagaaagaagtgggaagatgaaa
gttgttgctcaggttcttaaggtttggaaagaacaaggccaccgtgttcttctttttgct
cagactcaacagatgcttgatattcttgagagctttttgattggtgattcctatacttat
agacgaatggacggtttaacccctgtgaaacaaaggatgactttaatggatgagtttaat
aattctcccgatatcttcatcttcattttgactactaaagttggtggattggggacaaat
ttaaccggtgcaaatcgagtcattatatttgatcccgattggaacccttctaccgacatg
caggcgagggagcgtgcatggcgtattggtcaaacaaaagatgtaacgatttacagattg
ataacgcgtggaacgatagaagaaaaagtatatcatcgacaaatatacaaacatttttta
accaacaaaatcttgaaaaacccacaacagagaagattctttaaagctcgcgacatgaaa
gatctcttcacattgaatgatgataaagaaaacggaagcaccgaaacatcaaaccttttc
agtcaattatcggaagatgtaaacatcgtccaccaaaatgaaaatcccgaaacactcgcc
aaaaagaaacaaaaggaaaagattgatgacagcaatgaaggaggggtagaagaggaaaca
aatattttgcgctctctctttgatgctcaagggattcatagtgcggtgaaccatgatgtg
ataatgaatgctaacaatgatgaggaaaaggtgaaactcgatgaacaagcttcacaagtt
gcacatcgagcagcggaagcattacgccaatcgcgaatgcttaggagccgtgaaagcatc
gcggttccaacctggaccgggaaatcaggaaccgcgggtgcacccatgggcggtggtcgg
aagttcgggtcaatggtcaactcaaagttggttgctaaaaccagaatcgaacatggatct
ggatctggatcatctaagtttgttgttggagcatctggtgggaaagcgttatcttcatct
gagttattggctaaaattagagggacccaagagcaagcggttggtgatgcattgggtgcg
ggttcatcggttagaccgcagaatttgggtggggtgcagccggaggttctgattcgacaa
atttgtagttttttgcagcaaagaggtgggaccactgattcgggtagtatagtcgaccat
tttaaagataggattccctcaaaggatttgcctgtgtttaagtctcttttgaaggagatt
gcaactttgcaaaaaactccgaatggctcttcctggattttgaaatctgagtatcaatag
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integrated database retrieval system
